Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4608

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4607: 12975 - BLAST TrfA domain protein, putative [Rhizoctonia solani AG-..., at 571268 to 571973 12975 mRNA_4608: 12976 - KOG0254 Predicted transporter (major facilitator superfamily), at 572565 to 575380 12976 mRNA_4609: 12977 - K00008 SORD, gutB L-iditol 2-dehydrogenase, at 575731 to 577281 12977

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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571,680 + 12975 mRNA_4607 0.58 1.2
571,924 - -1.9
572,085 + 0.4
572,100 + 1.3
572,113 - 0.1
572,118 - 0.8
572,151 + -4.2
572,179 + 0.5
572,269 + 1.0
572,593 - -0.2
572,830 - -0.8
573,320 + 12976 mRNA_4608 0.27 -1.1
574,297 - 12976 mRNA_4608 0.62 -1.5
574,840 - 12976 mRNA_4608 0.81 0.6
575,011 + 12976 mRNA_4608 0.87 -0.1
575,174 - -0.1
575,193 + -0.3
575,483 - 0.3
575,504 - 1.7
575,510 - -1.2
575,511 + -0.8
575,516 - 1.4
575,519 - 1.2
575,520 - -2.5
575,521 + -0.0
575,538 - 0.3
575,553 - -0.7
575,559 + 0.0
575,562 - 0.1
575,611 - -0.0
575,613 + -1.1
575,616 + 1.0
575,617 - 0.6
575,629 + 1.0
575,636 - -1.6
575,640 - 0.4
575,643 + -0.3
575,643 + -0.9
575,646 - 0.5
575,651 + -1.5
575,656 + -1.4
575,657 + 0.8
575,666 + 1.2
575,687 - -0.3
575,689 + -2.3
575,753 - -0.6
575,908 + 12977 mRNA_4609 0.11 -0.4
575,912 + 12977 mRNA_4609 0.12 -2.4
575,915 - 12977 mRNA_4609 0.12 0.5
575,922 - 12977 mRNA_4609 0.12 0.0
575,941 - 12977 mRNA_4609 0.14 1.3
575,948 + 12977 mRNA_4609 0.14 -0.4