Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4592

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4591: 12959 - KOG0379 Kelch repeat-containing proteins, at 538604 to 541004 12959 mRNA_4592: 12960 - K11655 BAZ1A, ACF1 bromodomain adjacent to zinc finger domain protein 1A, at 541515 to 545296 12960 mRNA_4593: 12961 - K05286 PIGB phosphatidylinositol glycan, class B, at 546117 to 548213 12961

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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540,593 - 12959 mRNA_4591 0.83 -0.2
540,609 + 12959 mRNA_4591 0.84 -0.6
540,707 - 12959 mRNA_4591 0.88 -2.1
540,881 - 1.0
541,009 - 0.2
541,017 + -0.5
541,029 + 0.3
541,171 - -1.5
541,174 - -0.2
541,175 - -0.2
541,186 - -0.4
541,194 - 0.6
541,198 - 0.6
541,200 + 0.1
541,312 + 0.2
541,317 + -0.4
541,377 + 1.0
541,386 - 0.6
541,394 - 0.2
541,544 + 0.3
541,548 + -0.1
542,418 + 12960 mRNA_4592 0.24 0.3
542,812 - 12960 mRNA_4592 0.34 2.3
545,305 + 1.0
545,462 - 0.6
545,665 + 0.0
545,706 + -0.9
545,751 - 0.1
545,752 + 0.3
545,760 + -2.1
545,763 + -0.5
545,777 - 0.2
545,839 - -0.9
545,941 - -0.5
545,960 + 0.2
545,969 - 0.1
545,976 + -1.2
545,991 - -2.7
545,991 - 0.3
546,112 + 0.3