Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4583

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4582: 12950 - KOG2450 Aldehyde dehydrogenase, at 517111 to 519102 12950 mRNA_4583: 12951 - Hypothetical Protein, at 519562 to 522262 12951 mRNA_4584: 12952 - KOG2217 U4/U6.U5 snRNP associated protein, at 522461 to 526317 12952

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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518,789 + 12950 mRNA_4582 0.84 0.4
518,897 - 12950 mRNA_4582 0.90 -1.6
519,103 + -1.2
519,106 - 1.0
519,287 + -2.9
519,348 - -0.4
519,374 + -0.3
519,378 - 0.3
519,401 + -0.2
519,406 - -2.0
519,409 - -0.7
519,831 + -0.5
519,831 + 0.9
519,845 - 12951 mRNA_4583 0.10 0.6
519,965 - 12951 mRNA_4583 0.15 -2.9
519,971 + 12951 mRNA_4583 0.15 -2.6
520,103 + 12951 mRNA_4583 0.20 0.5
520,132 + 12951 mRNA_4583 0.21 -0.8
521,001 + 12951 mRNA_4583 0.53 -2.2
521,138 - 12951 mRNA_4583 0.58 -0.4
521,253 - 12951 mRNA_4583 0.63 1.0
521,579 + 12951 mRNA_4583 0.75 0.8
521,864 - 12951 mRNA_4583 0.85 -0.4
523,129 + 12952 mRNA_4584 0.17 0.3
523,207 + 12952 mRNA_4584 0.19 -0.8
523,212 - 12952 mRNA_4584 0.19 0.0