Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4582

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4581: 12949 - K17964 LRPPRC leucine-rich PPR motif-containing protein, mitochondrial, at 513749 to 516613 12949 mRNA_4582: 12950 - KOG2450 Aldehyde dehydrogenase, at 517111 to 519102 12950 mRNA_4583: 12951 - Hypothetical Protein, at 519562 to 522262 12951

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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516,669 + -0.3
516,744 + 0.8
516,760 + 0.7
516,879 + -0.7
516,896 + 0.4
516,897 + -0.9
516,902 + -1.7
516,984 - -0.3
516,988 - 2.4
516,990 + -0.7
517,023 + -0.0
517,029 + -0.5
517,045 - 0.4
517,061 + -0.3
517,067 + 0.1
517,210 + -0.2
517,328 - 12950 mRNA_4582 0.11 -1.0
517,339 - 12950 mRNA_4582 0.11 -0.5
517,364 - 12950 mRNA_4582 0.13 -0.7
517,479 - 12950 mRNA_4582 0.18 -0.7
517,485 - 12950 mRNA_4582 0.19 -0.5
517,654 - 12950 mRNA_4582 0.27 -0.2
517,793 + 12950 mRNA_4582 0.34 0.1
517,967 - 12950 mRNA_4582 0.43 1.2
518,066 + 12950 mRNA_4582 0.48 -0.1
518,350 - 12950 mRNA_4582 0.62 0.8
518,789 + 12950 mRNA_4582 0.84 0.4
518,897 - 12950 mRNA_4582 0.90 -1.6
519,103 + -1.2
519,106 - 1.0
519,287 + -2.9
519,348 - -0.4
519,374 + -0.3
519,378 - 0.3
519,401 + -0.2
519,406 - -2.0
519,409 - -0.7
519,831 + -0.5
519,831 + 0.9
519,845 - 12951 mRNA_4583 0.10 0.6
519,965 - 12951 mRNA_4583 0.15 -2.9
519,971 + 12951 mRNA_4583 0.15 -2.6