Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4577

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4576: 12944 - K00787 FDPS farnesyl diphosphate synthase, at 502452 to 503977 12944 mRNA_4577: 12945 - HMMPfam-CFEM domain-PF05730,SMART--SM00747, at 504729 to 505838 12945 mRNA_4578: 12946 - Hypothetical Protein, at 506519 to 507162 12946

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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504,044 - 2.0
504,197 - 0.6
504,325 + 0.2
504,376 + -0.1
504,465 - -0.1
504,489 + 0.1
504,496 + -0.9
504,511 + 1.7
504,516 - 1.0
504,523 + -1.6
504,523 - -0.2
504,525 - 0.9
504,529 + 0.8
504,529 - 1.2
504,537 + 1.8
504,538 - 0.4
504,538 + 0.1
504,543 - -0.8
504,545 - 1.6
504,546 + 1.3
504,549 - -1.0
504,550 + -1.1
504,551 - -0.8
504,557 + -0.2
504,558 - 2.5
504,559 - -1.5
504,560 - -1.3
504,561 + -0.2
504,562 - 1.4
504,563 - -1.2
504,564 + 0.1
504,565 + -1.1
504,566 - -1.5
504,567 - 0.2
504,572 + 1.8
504,574 - 0.1
504,575 + -2.3
504,580 + -0.0
504,585 + -0.5
504,594 + -0.1
504,601 + -0.1
504,617 - 0.7
504,642 + -0.0
504,646 + -0.0
504,648 - 0.1
504,649 - -1.9
504,653 + 0.5
504,655 + -1.1
504,655 - 1.3
504,655 - 1.4
504,661 + 0.7
504,675 - 0.5
504,676 + 0.9
504,676 + 2.9
504,679 - 0.3
504,682 + 0.1
504,850 + 12945 mRNA_4577 0.11 -0.1
504,973 + 12945 mRNA_4577 0.22 2.2
504,975 - 12945 mRNA_4577 0.22 -2.0
504,975 - 12945 mRNA_4577 0.22 0.4
504,976 + 12945 mRNA_4577 0.22 -1.5
504,976 + 12945 mRNA_4577 0.22 -1.4
504,977 + 12945 mRNA_4577 0.22 -2.2
504,979 - 12945 mRNA_4577 0.23 -0.3
504,980 + 12945 mRNA_4577 0.23 -0.4
505,001 - 12945 mRNA_4577 0.25 0.1
505,097 - 12945 mRNA_4577 0.33 1.9
505,113 + 12945 mRNA_4577 0.35 1.2
505,127 + 12945 mRNA_4577 0.36 0.8
505,147 + 12945 mRNA_4577 0.38 -0.9
505,165 + 12945 mRNA_4577 0.39 -0.4
505,223 + 12945 mRNA_4577 0.45 1.5
505,293 - 12945 mRNA_4577 0.51 1.2
505,305 + 12945 mRNA_4577 0.52 1.2
505,423 - 12945 mRNA_4577 0.63 -0.8
505,459 - 12945 mRNA_4577 0.66 1.1
505,586 + 12945 mRNA_4577 0.77 0.3
505,686 + 12945 mRNA_4577 0.86 -0.3
505,727 - 12945 mRNA_4577 0.90 0.0
505,992 - 0.0
506,054 + 0.8
506,118 + -0.2
506,141 + -0.5
506,214 - 1.7
506,231 + 0.9
506,276 + -0.0
506,277 - -0.9
506,279 - 0.1
506,304 + -1.2
506,304 + -0.9
506,306 + 0.2
506,427 + -0.3