Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4549

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4548: 12916 - K03392 ACMSD aminocarboxymuconate-semialdehyde decarboxylase, at 433580 to 435269 12916 mRNA_4549: 12917 - HMMPfam-Protein of unknown function (DUF1769)-PF08588, at 435952 to 437989 12917 mRNA_4550: 12918 - K16186 RRAGC_D Ras-related GTP-binding protein C/D, at 438083 to 440152 12918

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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435,120 + 0.2
435,132 - -1.3
435,141 - -0.2
435,155 - 1.3
435,156 + -0.8
435,163 - 0.7
435,300 + 0.6
435,304 + 1.7
435,438 - 0.7
435,443 - -0.3
435,454 + 0.3
435,574 - -0.0
435,592 - -0.8
435,595 + 0.2
435,598 - 1.3
435,599 + 0.2
435,631 + -0.0
435,739 - -0.1
435,743 + -0.4
435,747 + -1.8
435,754 - -1.2
435,759 + 0.0
435,760 - -0.3
435,766 - 0.1
435,769 + -0.4
435,784 - -0.9
435,789 + 0.4
435,924 + 0.0
435,927 - 1.0
435,931 + 0.7
435,956 - 0.0
435,962 - -1.2
436,073 + -0.9
436,231 + 12917 mRNA_4549 0.14 -0.0
436,349 - 12917 mRNA_4549 0.19 -0.3
436,363 + 12917 mRNA_4549 0.20 2.3
436,512 + 12917 mRNA_4549 0.27 0.2
437,409 - 12917 mRNA_4549 0.71 -0.7
437,741 + 12917 mRNA_4549 0.88 0.7
438,385 - 12918 mRNA_4550 0.15 0.6
438,386 + 12918 mRNA_4550 0.15 -2.2
438,387 - 12918 mRNA_4550 0.15 1.4
438,398 + 12918 mRNA_4550 0.15 -0.9
438,425 + 12918 mRNA_4550 0.17 -2.0