Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4490

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4489: 12857 - KOG1208 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 302712 to 304024 12857 mRNA_4490: 12858 - KOG1208 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 304461 to 305865 12858 mRNA_4491: 12859 - Hypothetical Protein, at 306091 to 307232 12859

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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303,480 - 12857 mRNA_4489 0.58 -0.5
303,490 - 12857 mRNA_4489 0.59 -1.2
303,781 - 12857 mRNA_4489 0.81 -0.8
303,796 + 12857 mRNA_4489 0.83 1.8
303,924 - 1.2
303,937 - 0.3
304,081 - 0.3
304,083 + -1.6
304,112 + -1.5
304,112 + 0.8
304,122 + -3.5
304,123 - -0.2
304,174 - -0.1
304,196 - 0.5
304,234 + -0.9
304,271 + 1.3
304,316 - 0.7
304,338 + -0.3
304,668 - 12858 mRNA_4490 0.15 -2.6
304,947 + 12858 mRNA_4490 0.35 -0.3
305,112 + 12858 mRNA_4490 0.46 0.6
305,263 - 12858 mRNA_4490 0.57 1.0
305,325 - 12858 mRNA_4490 0.61 -1.0
305,721 + 12858 mRNA_4490 0.90 0.4
305,904 - 0.9
306,298 + 12859 mRNA_4491 0.18 2.1
306,548 - 12859 mRNA_4491 0.40 -0.4
306,586 + 12859 mRNA_4491 0.43 -0.2
306,765 + 12859 mRNA_4491 0.59 -0.4
306,812 + 12859 mRNA_4491 0.63 0.7