Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4489

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4488: 12856 - BLAST phospholipase C [Moesziomyces antarcticus T-34], at 301518 to 302496 12856 mRNA_4489: 12857 - KOG1208 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 302712 to 304024 12857 mRNA_4490: 12858 - KOG1208 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 304461 to 305865 12858

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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302,582 - -0.3
302,596 - -0.5
302,620 + 0.3
302,643 + 0.5
302,762 + 1.0
302,764 - -0.5
302,884 + 12857 mRNA_4489 0.13 0.8
303,064 - 12857 mRNA_4489 0.27 0.2
303,201 - 12857 mRNA_4489 0.37 -1.2
303,480 - 12857 mRNA_4489 0.58 -0.5
303,490 - 12857 mRNA_4489 0.59 -1.2
303,781 - 12857 mRNA_4489 0.81 -0.8
303,796 + 12857 mRNA_4489 0.83 1.8
303,924 - 1.2
303,937 - 0.3
304,081 - 0.3
304,083 + -1.6
304,112 + -1.5
304,112 + 0.8
304,122 + -3.5
304,123 - -0.2
304,174 - -0.1
304,196 - 0.5
304,234 + -0.9
304,271 + 1.3
304,316 - 0.7
304,338 + -0.3
304,668 - 12858 mRNA_4490 0.15 -2.6
304,947 + 12858 mRNA_4490 0.35 -0.3