Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4443

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4442: 12810 - SUPERFAMILY--SSF52047, at 188576 to 190157 12810 mRNA_4443: 12811 - SUPERFAMILY--SSF52047, at 190783 to 192210 12811 mRNA_4444: 12812 - K14327 UPF2, RENT2 regulator of nonsense transcripts 2, at 192808 to 197198 12812

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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190,430 + 0.0
190,442 + -1.0
190,529 - 0.3
190,540 - 1.4
190,546 - 0.4
190,549 + 0.4
190,686 - -0.7
190,701 + -1.0
191,313 - 12811 mRNA_4443 0.37 3.4
191,467 - 12811 mRNA_4443 0.48 2.4
191,548 + 12811 mRNA_4443 0.54 -1.4
191,858 - 12811 mRNA_4443 0.75 -2.5
192,001 - 12811 mRNA_4443 0.85 0.3
192,009 - 12811 mRNA_4443 0.86 1.4
192,040 - 12811 mRNA_4443 0.88 -1.7
192,045 + 12811 mRNA_4443 0.88 -2.6
192,112 + 3.7
192,304 + 0.1
192,310 + 0.7
192,714 + 0.5
192,818 + -0.2
193,001 - -0.0
193,013 - 0.9
193,052 + -1.1