Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4437

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4436: 12804 - Hypothetical Protein, at 178306 to 178939 12804 mRNA_4437: 12805 - KOG4629 Predicted mechanosensitive ion channel, at 179176 to 181994 12805 mRNA_4438: 12806 - Hypothetical Protein, at 182518 to 183149 12806

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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178,180 - -0.3
178,275 + 0.0
178,278 - -1.0
178,309 - 1.6
178,315 - -0.3
178,320 - 0.6
178,320 - -1.0
178,322 + -2.2
178,324 + -0.7
178,335 + -0.4
178,341 + 1.4
178,347 + 2.5
178,358 - 2.2
178,381 - 12804 mRNA_4436 0.12 -1.5
178,385 - 12804 mRNA_4436 0.12 -2.1
178,488 + 12804 mRNA_4436 0.29 2.0
178,622 - 12804 mRNA_4436 0.50 -1.1
178,627 + 12804 mRNA_4436 0.51 -0.1
178,736 + 12804 mRNA_4436 0.68 1.7
178,820 + 12804 mRNA_4436 0.81 0.4
178,867 + 12804 mRNA_4436 0.88 0.7
178,884 + -2.3
178,885 - 0.0
178,939 - -0.3
179,029 - -1.9
179,032 - 0.2
179,033 + 0.1
179,039 + 0.9
179,039 + 1.7
179,078 - 1.0
179,226 - -2.3
179,233 + -0.5
179,255 + -2.7
179,707 - 12805 mRNA_4437 0.19 0.3
179,793 + 12805 mRNA_4437 0.22 -1.9
179,910 + 12805 mRNA_4437 0.26 0.8
179,959 + 12805 mRNA_4437 0.28 -0.5
179,988 - 12805 mRNA_4437 0.29 2.3
180,064 + 12805 mRNA_4437 0.32 -0.6
180,107 + 12805 mRNA_4437 0.33 0.4
180,210 - 12805 mRNA_4437 0.37 -2.6
180,480 - 12805 mRNA_4437 0.46 0.7
180,542 - 12805 mRNA_4437 0.48 0.6
180,553 - 12805 mRNA_4437 0.49 0.4
180,673 - 12805 mRNA_4437 0.53 -1.3
180,922 - 12805 mRNA_4437 0.62 -0.2
181,265 + 12805 mRNA_4437 0.74 0.6
181,306 - 12805 mRNA_4437 0.76 0.5
181,412 + 12805 mRNA_4437 0.79 -1.8
181,660 - 12805 mRNA_4437 0.88 0.0
182,260 + 0.3
182,277 + -0.6
182,427 - -0.4
182,439 - -0.3
182,459 + -0.4
182,492 + 2.4
182,519 + -0.5
182,534 + 0.6
182,594 + 12806 mRNA_4438 0.12 1.2
182,610 + 12806 mRNA_4438 0.15 0.2
182,754 + 12806 mRNA_4438 0.37 0.9
182,770 - 12806 mRNA_4438 0.40 -1.0
182,892 + 12806 mRNA_4438 0.59 0.7