Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4425

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4424: 12792 - KOG3860 Acyltransferase required for palmitoylation of Hedgehog (Hh) family of secreted signaling proteins, at 151250 to 153858 12792 mRNA_4425: 12793 - KOG3844 Predicted component of NuA3 histone acetyltransferase complex, at 153897 to 156025 12793 mRNA_4426: 12794 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SMART-A Receptor for Ubiquitination Targets-SM00256,SUPERFAMILY--SSF81383, at 156367 to 159071 12794

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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154,000 + -0.2
154,210 - 12793 mRNA_4425 0.15 -0.7
154,517 + 12793 mRNA_4425 0.29 1.0
154,636 - 12793 mRNA_4425 0.35 -0.4
154,736 - 12793 mRNA_4425 0.39 -0.1
154,888 + 12793 mRNA_4425 0.47 0.0
154,914 - 12793 mRNA_4425 0.48 0.3
155,032 - 12793 mRNA_4425 0.53 -0.2
155,051 - 12793 mRNA_4425 0.54 -1.3
155,189 + 12793 mRNA_4425 0.61 2.1
155,214 + 12793 mRNA_4425 0.62 0.2
155,314 + 12793 mRNA_4425 0.67 0.2
155,326 + 12793 mRNA_4425 0.67 1.9
155,449 - 12793 mRNA_4425 0.73 0.8
155,455 - 12793 mRNA_4425 0.73 0.1
155,497 - 12793 mRNA_4425 0.75 0.3
155,640 + 12793 mRNA_4425 0.82 0.1
155,659 - 12793 mRNA_4425 0.83 -0.1
155,675 - 12793 mRNA_4425 0.84 0.9
155,710 - 12793 mRNA_4425 0.85 -0.2
155,760 + 12793 mRNA_4425 0.88 -0.1
155,762 - 12793 mRNA_4425 0.88 0.3
155,773 - 12793 mRNA_4425 0.88 1.7
155,922 - -0.5
156,072 + -0.7
156,078 + 0.2
156,081 - 0.2
156,099 + -1.0
156,125 - -0.6
156,139 + -2.6
156,213 - 1.2
156,339 - 0.6
156,515 - 1.8
156,674 - 12794 mRNA_4426 0.11 -0.2
156,852 + 12794 mRNA_4426 0.18 0.7
156,939 - 12794 mRNA_4426 0.21 0.7