Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4420

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4419: 12787 - K11121 SIR2 NAD-dependent histone deacetylase SIR2, at 139865 to 142182 12787 mRNA_4420: 12788 - Hypothetical Protein, at 142782 to 144296 12788 mRNA_4421: 12789 - K17765 MDM12 mitochondrial distribution and morphology protein 12, at 144422 to 145671 12789

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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142,307 + 0.3
142,356 - -0.3
142,405 - 0.8
142,412 + 0.7
142,487 + 1.7
142,562 + 0.6
142,622 + 0.1
142,628 - -1.3
142,727 - -1.5
143,182 + 12788 mRNA_4420 0.26 -0.2
143,182 + 12788 mRNA_4420 0.26 0.2
143,183 - 12788 mRNA_4420 0.26 -0.3
143,185 + 12788 mRNA_4420 0.27 -2.2
143,207 + 12788 mRNA_4420 0.28 -0.6
143,214 - 12788 mRNA_4420 0.29 -0.1
143,368 + 12788 mRNA_4420 0.39 -0.2
143,371 - 12788 mRNA_4420 0.39 1.0
143,440 + 12788 mRNA_4420 0.43 -1.7
143,486 - 12788 mRNA_4420 0.46 1.7
143,644 - 12788 mRNA_4420 0.57 1.2
143,784 + 12788 mRNA_4420 0.66 0.5
143,797 - 12788 mRNA_4420 0.67 1.0
144,073 - 12788 mRNA_4420 0.85 0.8
144,090 - 12788 mRNA_4420 0.86 1.0
144,115 - 12788 mRNA_4420 0.88 -0.8
144,234 + 0.5
144,373 + -1.3
144,383 - -2.7