Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4417

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4416: 12784 - K00002 AKR1A1, adh alcohol dehydrogenase (NADP+), at 134508 to 136011 12784 mRNA_4417: 12785 - Hypothetical Protein, at 136437 to 137903 12785 mRNA_4418: 12786 - KOG3683 Uncharacterized conserved protein, at 138075 to 139542 12786

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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135,456 + 12784 mRNA_4416 0.63 1.5
135,457 - 12784 mRNA_4416 0.63 -0.6
135,465 + 12784 mRNA_4416 0.64 -0.6
135,488 - 12784 mRNA_4416 0.65 -1.7
135,499 - 12784 mRNA_4416 0.66 0.0
135,587 + 12784 mRNA_4416 0.72 0.5
135,603 - 12784 mRNA_4416 0.73 0.0
135,669 + 12784 mRNA_4416 0.77 0.2
135,776 - 12784 mRNA_4416 0.84 -2.0
135,847 - 12784 mRNA_4416 0.89 0.4
135,903 + -0.8
135,966 + -0.1
136,058 + 1.9
136,176 - -0.2
136,183 - 1.2
136,207 - -2.7
136,207 + -1.6
136,233 + 0.3
136,253 + 1.7
136,394 - -0.6
136,528 + -0.7
136,546 - 0.4
136,694 + 12785 mRNA_4417 0.18 0.2
136,779 + 12785 mRNA_4417 0.23 1.4
136,782 - 12785 mRNA_4417 0.24 -0.4
136,782 + 12785 mRNA_4417 0.24 2.5
136,850 + 12785 mRNA_4417 0.28 0.0
137,161 + 12785 mRNA_4417 0.49 0.2
137,185 + 12785 mRNA_4417 0.51 -0.1
137,188 - 12785 mRNA_4417 0.51 -2.2
137,191 + 12785 mRNA_4417 0.51 -2.0
137,312 + 12785 mRNA_4417 0.60 -1.0
137,420 + 12785 mRNA_4417 0.67 0.4
137,610 + 12785 mRNA_4417 0.80 -0.1
137,697 - 12785 mRNA_4417 0.86 0.0
138,161 + -0.4
138,304 + 12786 mRNA_4418 0.16 0.8
138,318 + 12786 mRNA_4418 0.17 0.3
138,573 + 12786 mRNA_4418 0.34 -1.0
138,733 + 12786 mRNA_4418 0.45 -0.3
138,774 + 12786 mRNA_4418 0.48 -0.7
138,821 - 12786 mRNA_4418 0.51 -2.2
138,825 + 12786 mRNA_4418 0.51 -0.7