Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4393

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4392: 12760 - KOG3069 Peroxisomal NUDIX hydrolase, at 80185 to 81389 12760 mRNA_4393: 12761 - K00029 E1.1.1.40, maeB malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+), at 82282 to 84844 12761 mRNA_4394: 12762 - ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SUPERFAMILY--SSF57701, at 85046 to 87560 12762

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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81,342 - 0.8
81,354 - -2.8
81,367 + -1.5
81,483 + 1.9
81,504 + -0.3
81,516 + -0.3
81,524 + -1.4
81,542 - 1.9
81,646 - -0.5
81,650 - 0.2
81,655 + -0.4
81,658 - 0.5
81,661 + 0.8
81,674 - -0.7
81,699 - 0.8
81,701 - -0.1
81,701 - -0.2
81,706 + -0.6
81,709 - 0.3
81,709 - -0.1
81,710 + -1.0
81,710 + 2.2
81,716 + -1.9
81,716 + -0.5
81,727 - -0.8
81,741 + 1.7
81,759 + 0.3
81,760 - 3.5
81,760 - -0.7
81,761 - 2.7
81,762 - -2.0
81,769 - -1.6
81,773 - -0.9
81,778 - -1.4
81,784 + 0.4
81,795 - -1.0
81,849 + 1.6
81,869 + -0.2
81,886 - 0.6
81,896 - 1.7
81,898 + 0.9
81,900 - -1.3
81,911 - 1.8
81,913 - 0.6
81,924 + 1.4
81,929 + 1.6
82,077 + 1.2
82,079 + -1.5
82,079 + -1.3
82,087 + 0.4
82,096 + 2.9
82,236 - 0.8
82,243 - 0.9
82,380 - -1.7
82,401 + 0.1
82,518 - 0.8
82,523 + -0.6
82,525 - 1.9
82,535 + 1.5
82,537 + -0.7
82,685 + 12761 mRNA_4393 0.16 -0.6
82,840 + 12761 mRNA_4393 0.22 0.6
82,982 + 12761 mRNA_4393 0.27 -1.7
83,288 - 12761 mRNA_4393 0.39 -0.3
83,587 - 12761 mRNA_4393 0.51 -1.0
83,730 + 12761 mRNA_4393 0.56 -1.8
83,786 - 12761 mRNA_4393 0.59 -1.5
84,272 - 12761 mRNA_4393 0.78 -1.5
84,523 + 12761 mRNA_4393 0.87 -0.5
84,662 + -1.0
84,830 - -0.6
84,946 - 0.1