Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4385

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4384: 12752 - K00232 E1.3.3.6, ACOX1, ACOX3 acyl-CoA oxidase, at 65499 to 68176 12752 mRNA_4385: 12753 - HMMPfam-Polysaccharide deacetylase-PF01522,ProSiteProfiles-NodB homology domain profile.-PS51677,SUPERFAMILY--SSF88713, at 68273 to 69417 12753 mRNA_4386: 12754 - BLAST polysaccharide lyase family 14 protein [Hypholoma sub..., at 70020 to 71335 12754

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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67,280 - 12752 mRNA_4384 0.67 -0.4
67,638 - 12752 mRNA_4384 0.80 2.4
67,885 - 12752 mRNA_4384 0.89 -0.5
67,887 - 12752 mRNA_4384 0.89 1.0
67,920 - -1.0
68,005 + -1.9
68,016 + 0.5
68,017 + 2.3
68,086 - -2.0
68,087 - 0.1
68,090 - 2.5
68,099 + 0.2
68,109 - 0.2
68,216 + 0.0
68,241 - 0.2
68,338 + -0.7
68,503 + 12753 mRNA_4385 0.20 -0.6
68,536 + 12753 mRNA_4385 0.23 1.9
68,648 - 12753 mRNA_4385 0.33 1.5
68,731 - 12753 mRNA_4385 0.40 1.8
68,772 + 12753 mRNA_4385 0.44 0.3
69,019 - 12753 mRNA_4385 0.65 -1.1
69,022 - 12753 mRNA_4385 0.65 -0.2
69,030 + 12753 mRNA_4385 0.66 0.2
69,331 - -1.7
69,361 + 0.7
69,372 - 2.3
69,431 - 0.9
69,483 + 0.8
69,513 - -1.1
69,526 - -1.2
69,563 + 0.3
69,621 + -3.2
69,710 + -0.2
70,023 + -0.3