Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4379

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4378: 12746 - KOG2432 Uncharacterized conserved protein, at 53641 to 56318 12746 mRNA_4379: 12747 - KOG4359 Protein kinase C inhibitor-like protein, at 56702 to 58135 12747 mRNA_4380: 12748 - K00550 OPI3 methylene-fatty-acyl-phospholipid synthase, at 58451 to 59547 12748

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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56,203 - -1.0
56,235 + -2.1
56,332 + -1.2
56,506 + 0.5
56,644 + -0.8
56,654 - 0.7
56,739 + -1.1
56,801 + -0.1
56,932 - 12747 mRNA_4379 0.16 0.1
56,940 - 12747 mRNA_4379 0.17 0.1
56,949 - 12747 mRNA_4379 0.17 0.6
56,949 + 12747 mRNA_4379 0.17 -0.4
56,950 + 12747 mRNA_4379 0.17 -0.4
56,959 + 12747 mRNA_4379 0.18 -0.9
57,075 + 12747 mRNA_4379 0.26 -0.3
57,226 - 12747 mRNA_4379 0.37 0.8
57,228 - 12747 mRNA_4379 0.37 0.0
57,231 - 12747 mRNA_4379 0.37 1.9
57,550 + 12747 mRNA_4379 0.59 0.4
57,562 - 12747 mRNA_4379 0.60 0.6
57,568 - 12747 mRNA_4379 0.60 0.9
57,714 - 12747 mRNA_4379 0.71 -0.5
57,787 - 12747 mRNA_4379 0.76 -0.1
57,790 + 12747 mRNA_4379 0.76 -0.6
57,822 + 12747 mRNA_4379 0.78 -1.6
57,937 - 12747 mRNA_4379 0.86 -0.3
57,947 + 12747 mRNA_4379 0.87 0.3
57,966 + 12747 mRNA_4379 0.88 0.1
58,084 - 2.0
58,130 + 1.3
58,201 + -0.8
58,284 - 0.5
58,368 - 0.1
58,391 - -2.1
58,400 - 0.6
58,400 - -0.2
58,401 + 0.5
58,403 + 0.0
58,405 - 0.1
58,424 - -1.1
58,424 - 0.9
58,448 - -0.5
58,448 - 1.1
58,449 + -0.4
58,449 + -0.1
58,449 + -0.4
58,467 + -0.7
58,512 + 0.0
58,530 + -0.5
58,539 - -4.0
58,589 + 12748 mRNA_4380 0.13 -1.5
58,589 - 12748 mRNA_4380 0.13 -3.2
58,602 - 12748 mRNA_4380 0.14 -1.6
58,698 - 12748 mRNA_4380 0.23 -3.7
58,710 - 12748 mRNA_4380 0.24 -0.8
58,716 + 12748 mRNA_4380 0.24 -3.3
58,985 + 12748 mRNA_4380 0.49 -0.7