Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4378

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4377: 12745 - Hypothetical Protein, at 52516 to 53498 12745 mRNA_4378: 12746 - KOG2432 Uncharacterized conserved protein, at 53641 to 56318 12746 mRNA_4379: 12747 - KOG4359 Protein kinase C inhibitor-like protein, at 56702 to 58135 12747

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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52,849 + 12745 mRNA_4377 0.34 0.7
52,852 - 12745 mRNA_4377 0.34 -1.0
52,854 + 12745 mRNA_4377 0.34 -1.4
52,956 + 12745 mRNA_4377 0.45 -0.7
53,093 - 12745 mRNA_4377 0.59 0.3
53,387 + 12745 mRNA_4377 0.89 -1.0
53,449 + -1.3
53,487 + 1.9
53,556 + 2.2
53,584 - -0.4
53,585 + -0.3
53,708 - 0.6
53,716 + -0.1
53,730 - 0.1
53,733 + 2.2
53,866 + -0.6
53,924 + 12746 mRNA_4378 0.11 0.0
54,053 - 12746 mRNA_4378 0.15 0.2
54,161 + 12746 mRNA_4378 0.19 -2.3
54,174 - 12746 mRNA_4378 0.20 0.1
54,343 + 12746 mRNA_4378 0.26 0.9
54,468 - 12746 mRNA_4378 0.31 1.0
55,098 + 12746 mRNA_4378 0.54 0.8
55,117 + 12746 mRNA_4378 0.55 0.1
55,147 + 12746 mRNA_4378 0.56 -0.4
55,148 - 12746 mRNA_4378 0.56 -1.7
55,155 + 12746 mRNA_4378 0.57 0.9
55,326 - 12746 mRNA_4378 0.63 0.6
55,467 - 12746 mRNA_4378 0.68 1.2
55,679 + 12746 mRNA_4378 0.76 0.6
56,203 - -1.0
56,235 + -2.1
56,332 + -1.2
56,506 + 0.5
56,644 + -0.8
56,654 - 0.7
56,739 + -1.1
56,801 + -0.1
56,932 - 12747 mRNA_4379 0.16 0.1
56,940 - 12747 mRNA_4379 0.17 0.1
56,949 - 12747 mRNA_4379 0.17 0.6
56,949 + 12747 mRNA_4379 0.17 -0.4
56,950 + 12747 mRNA_4379 0.17 -0.4
56,959 + 12747 mRNA_4379 0.18 -0.9
57,075 + 12747 mRNA_4379 0.26 -0.3
57,226 - 12747 mRNA_4379 0.37 0.8
57,228 - 12747 mRNA_4379 0.37 0.0
57,231 - 12747 mRNA_4379 0.37 1.9