Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4371

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4370: 12738 - HMMPfam-Purine nucleoside permease (NUP)-PF06516,PIRSF--PIRSF013171, at 30221 to 32027 12738 mRNA_4371: 12739 - K10877 RAD54B DNA repair and recombination protein RAD54B, at 32512 to 35317 12739

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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31,675 - 12738 mRNA_4370 0.80 1.0
31,682 + 12738 mRNA_4370 0.81 -0.6
31,705 - 12738 mRNA_4370 0.82 2.8
31,810 - 12738 mRNA_4370 0.88 0.1
31,920 + 0.3
31,953 - 0.3
32,084 + 0.8
32,104 - -0.2
32,105 + 0.4
32,124 - 0.5
32,126 + 1.7
32,130 + -1.4
32,130 + -1.2
32,132 - -0.1
32,133 - 0.3
32,134 - 0.3
32,157 - -0.9
32,198 + 0.7
32,251 - 0.1
32,257 - 0.7
32,260 - -0.0
32,260 - 0.6
32,261 - 1.3
32,263 - -0.1
32,287 - -0.3
32,311 + -0.7
32,318 + -0.4
32,328 + -1.3
32,437 - -0.3
32,455 - 0.1
32,524 - -0.2
32,639 - 0.3
32,662 + -1.0
32,664 + 0.1
32,696 - -1.5
32,766 - -0.1
32,815 + 12739 mRNA_4371 0.11 0.6
32,993 - 12739 mRNA_4371 0.17 -1.9
33,267 - 12739 mRNA_4371 0.27 0.2
33,394 + 12739 mRNA_4371 0.31 0.0
33,406 + 12739 mRNA_4371 0.32 -0.5
33,561 + 12739 mRNA_4371 0.37 0.9
33,639 + 12739 mRNA_4371 0.40 -0.9
33,662 - 12739 mRNA_4371 0.41 -0.3
33,682 + 12739 mRNA_4371 0.42 -0.8
34,904 + 12739 mRNA_4371 0.85 0.0
34,969 - 12739 mRNA_4371 0.88 0.9
34,986 + 12739 mRNA_4371 0.88 -0.8
35,006 + 12739 mRNA_4371 0.89 1.0
35,007 + 12739 mRNA_4371 0.89 -1.0
35,158 + 2.5
35,159 - -1.5
35,213 - 1.0
35,416 + 0.2
35,453 + -0.6
36,005 - 0.7
36,023 + 1.4
36,120 + 0.3
36,196 + 1.0