Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4323

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4322: 12690 - KOG0254 Predicted transporter (major facilitator superfamily), at 1905474 to 1907958 12690 mRNA_4323: 12691 - KOG1198 Zinc-binding oxidoreductase, at 1908331 to 1909628 12691 mRNA_4324: 12692 - K18754 LIN28 protein lin-28, at 1909910 to 1911534 12692

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,907,507 - 12690 mRNA_4322 0.82 -1.2
1,907,638 + 12690 mRNA_4322 0.87 -0.1
1,907,758 + -2.0
1,907,843 + 1.9
1,907,929 - 1.2
1,908,105 - 0.3
1,908,202 + -0.1
1,908,249 + -0.2
1,908,250 + -0.3
1,908,255 + -1.3
1,908,257 + 0.3
1,908,259 - -0.6
1,908,297 + -0.9
1,908,371 - -0.4
1,908,386 - 0.5
1,908,398 + -0.1
1,908,414 - 1.7
1,908,432 - -0.6
1,908,695 + 12691 mRNA_4323 0.28 -0.4
1,908,716 + 12691 mRNA_4323 0.30 -1.3
1,908,835 - 12691 mRNA_4323 0.39 -1.4
1,908,840 + 12691 mRNA_4323 0.39 1.6
1,908,862 + 12691 mRNA_4323 0.41 -0.2
1,909,462 - 12691 mRNA_4323 0.87 1.3
1,910,033 + 0.1
1,910,167 + 12692 mRNA_4324 0.16 -0.5
1,910,422 + 12692 mRNA_4324 0.32 0.0