Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4277

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4277: 12645 - K08773 RALBP1 RalA-binding protein 1, at 1781078 to 1785287 12645 mRNA_4278: 12646 - HMMPfam-Voltage-dependent anion channel-PF03595, at 1786017 to 1788218 12646

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,780,089 - -2.2
1,780,117 + 0.8
1,780,380 - 0.7
1,780,433 - 0.9
1,780,810 + -1.7
1,781,371 - -1.7
1,781,397 - 0.4
1,781,670 + 12645 mRNA_4277 0.14 0.2
1,781,854 + 12645 mRNA_4277 0.18 1.4
1,781,916 + 12645 mRNA_4277 0.20 -1.2
1,782,213 + 12645 mRNA_4277 0.27 1.0
1,782,386 - 12645 mRNA_4277 0.31 1.8
1,782,577 - 12645 mRNA_4277 0.36 -0.6
1,782,728 + 12645 mRNA_4277 0.39 0.8
1,782,863 + 12645 mRNA_4277 0.42 -0.1
1,782,968 - 12645 mRNA_4277 0.45 -0.7
1,783,016 + 12645 mRNA_4277 0.46 2.7
1,783,252 - 12645 mRNA_4277 0.52 -0.2
1,783,289 - 12645 mRNA_4277 0.53 -1.1
1,783,447 + 12645 mRNA_4277 0.56 -0.4
1,783,593 - 12645 mRNA_4277 0.60 2.2
1,783,803 - 12645 mRNA_4277 0.65 -0.7
1,783,905 + 12645 mRNA_4277 0.67 -1.4
1,784,446 + 12645 mRNA_4277 0.80 1.2
1,784,508 + 12645 mRNA_4277 0.81 0.1
1,784,595 + 12645 mRNA_4277 0.84 -1.3
1,784,755 - 12645 mRNA_4277 0.87 -2.0
1,784,770 + 12645 mRNA_4277 0.88 -0.7
1,785,010 - -0.4
1,785,051 + 0.2
1,785,217 + 0.1
1,785,290 - 1.1
1,785,345 - 0.2
1,785,357 + 0.8
1,785,491 + 1.1
1,785,629 - -0.8
1,785,629 - -0.1
1,785,639 + 0.5
1,785,651 + 1.5
1,785,889 + -0.3
1,785,921 - -0.2
1,785,929 - -0.7
1,786,089 + -1.5
1,786,110 - 1.0