Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4265

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4264: 12632 - Hypothetical Protein, at 1744091 to 1745665 12632 mRNA_4265: 12633 - BLAST lytic polysaccharide monooxygenase [Cenococcum geophi..., at 1746192 to 1748005 12633 mRNA_4266: 12634 - BLAST sucrase/ferredoxin-like domain-containing protein [Rh..., at 1748531 to 1749378 12634

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,745,811 + -1.3
1,746,478 + 12633 mRNA_4265 0.16 2.7
1,746,712 - 12633 mRNA_4265 0.29 0.3
1,746,820 - 12633 mRNA_4265 0.35 1.2
1,746,852 + 12633 mRNA_4265 0.36 -0.7
1,747,128 + 12633 mRNA_4265 0.52 -0.6
1,747,232 - 12633 mRNA_4265 0.57 -0.4
1,747,426 - 12633 mRNA_4265 0.68 2.5
1,747,695 - 12633 mRNA_4265 0.83 0.3
1,747,697 - 12633 mRNA_4265 0.83 -0.2
1,748,152 - 0.5
1,748,193 + 0.2
1,748,211 - 0.0
1,748,211 - -0.9
1,748,343 - -0.3
1,748,365 + 0.4
1,748,468 - 2.0
1,748,471 + 2.6
1,748,476 + -0.1
1,748,480 + 0.0
1,748,480 + -2.6
1,748,484 - -1.6
1,748,486 + 1.1
1,748,487 + -0.3
1,748,490 + -0.7
1,748,495 + 0.9
1,748,501 + -0.3
1,748,533 + 1.9
1,748,637 + 12634 mRNA_4266 0.12 -1.0
1,748,677 - 12634 mRNA_4266 0.17 -0.1
1,748,776 - 12634 mRNA_4266 0.29 -1.8
1,748,801 + 12634 mRNA_4266 0.32 1.0
1,748,801 + 12634 mRNA_4266 0.32 -0.0
1,748,817 + 12634 mRNA_4266 0.34 -0.1