Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4246

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4245: 12613 - Hypothetical Protein, at 1701205 to 1702275 12613 mRNA_4246: 12614 - KOG1172 Na+-independent Cl/HCO3 exchanger AE1 and related transporters (SLC4 family), at 1702381 to 1705218 12614 mRNA_4247: 12615 - KOG3188 Uncharacterized conserved protein, at 1705366 to 1706539 12615

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,701,438 - 12613 mRNA_4245 0.22 0.2
1,701,540 - 12613 mRNA_4245 0.31 0.8
1,701,562 - 12613 mRNA_4245 0.33 -0.3
1,701,753 - 12613 mRNA_4245 0.51 0.5
1,701,954 - 12613 mRNA_4245 0.70 -0.7
1,702,007 + 12613 mRNA_4245 0.75 0.2
1,702,060 - 12613 mRNA_4245 0.80 -0.5
1,702,204 - -0.2
1,702,308 - -0.5
1,702,342 - 0.7
1,702,370 + -1.4
1,702,469 - -0.9
1,702,507 + -1.3
1,702,635 - -0.3
1,702,643 - 0.1
1,702,948 - 12614 mRNA_4246 0.20 0.4
1,702,951 + 12614 mRNA_4246 0.20 -1.0
1,703,321 - 12614 mRNA_4246 0.33 -0.7
1,703,561 + 12614 mRNA_4246 0.42 -1.3
1,703,992 + 12614 mRNA_4246 0.57 -0.3
1,704,110 + 12614 mRNA_4246 0.61 0.3
1,704,127 - 12614 mRNA_4246 0.62 0.7
1,704,389 - 12614 mRNA_4246 0.71 -0.8
1,704,796 - 12614 mRNA_4246 0.85 0.5
1,704,856 + 12614 mRNA_4246 0.87 -0.2
1,705,128 + -0.2
1,705,152 + -0.4
1,705,291 - 0.0
1,705,306 - -0.5
1,705,595 - 12615 mRNA_4247 0.20 -1.5
1,705,606 + 12615 mRNA_4247 0.20 0.5
1,705,613 + 12615 mRNA_4247 0.21 -1.9
1,705,613 + 12615 mRNA_4247 0.21 0.7
1,705,629 + 12615 mRNA_4247 0.22 1.1
1,706,012 + 12615 mRNA_4247 0.55 -0.1
1,706,165 - 12615 mRNA_4247 0.68 0.0