Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4226

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4225: 12593 - HMMPfam-Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family-PF10342, at 1654260 to 1655493 12593 mRNA_4226: 12594 - K00700 GBE1, glgB 1,4-alpha-glucan branching enzyme, at 1655813 to 1659134 12594 mRNA_4227: 12595 - HMMPfam-F-box-like-PF12937,SUPERFAMILY--SSF48452, at 1659342 to 1664294 12595

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,654,928 + 12593 mRNA_4225 0.54 -0.5
1,655,203 - 12593 mRNA_4225 0.76 0.2
1,655,304 + 12593 mRNA_4225 0.85 1.8
1,655,307 - 12593 mRNA_4225 0.85 1.1
1,655,484 + 0.8
1,655,501 - 0.4
1,655,624 + 1.2
1,655,628 + 1.5
1,655,639 + -2.0
1,655,643 + 0.3
1,655,740 - -1.0
1,655,821 - -2.7
1,655,838 - 0.1
1,656,070 + -0.9
1,656,082 - -0.5
1,656,220 + 12594 mRNA_4226 0.12 -1.0
1,656,230 + 12594 mRNA_4226 0.13 -0.4
1,656,231 - 12594 mRNA_4226 0.13 -0.4
1,656,231 + 12594 mRNA_4226 0.13 -1.4
1,656,389 + 12594 mRNA_4226 0.17 0.8
1,656,505 - 12594 mRNA_4226 0.21 1.0
1,656,562 - 12594 mRNA_4226 0.23 0.9
1,656,654 + 12594 mRNA_4226 0.25 0.4
1,656,985 + 12594 mRNA_4226 0.35 1.0
1,656,988 - 12594 mRNA_4226 0.35 0.8
1,657,128 + 12594 mRNA_4226 0.40 0.4
1,657,308 + 12594 mRNA_4226 0.45 -2.7
1,657,520 - 12594 mRNA_4226 0.51 0.6
1,657,525 + 12594 mRNA_4226 0.52 1.4
1,657,527 - 12594 mRNA_4226 0.52 -0.2
1,657,797 - 12594 mRNA_4226 0.60 1.1
1,658,412 + 12594 mRNA_4226 0.78 0.8
1,658,482 + 12594 mRNA_4226 0.80 0.3
1,658,507 - 12594 mRNA_4226 0.81 -0.0
1,658,511 + 12594 mRNA_4226 0.81 0.8
1,658,523 + 12594 mRNA_4226 0.82 -0.7
1,658,574 + 12594 mRNA_4226 0.83 -2.3
1,658,661 - 12594 mRNA_4226 0.86 -0.3
1,658,668 + 12594 mRNA_4226 0.86 -2.2
1,658,835 - 0.5
1,658,843 - 0.1
1,658,856 - 0.1
1,658,959 - -0.3
1,658,979 - 0.3
1,658,982 + -2.2
1,659,044 + 2.3
1,659,118 + -1.7
1,659,158 + 0.2
1,659,158 + -0.8
1,659,275 + -2.5
1,659,478 + -0.1
1,659,901 + 12595 mRNA_4227 0.11 -0.3