Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4168

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4167: 12535 - Hypothetical Protein, at 1518124 to 1518875 12535 mRNA_4168: 12536 - K09487 HSP90B, TRA1 heat shock protein 90kDa beta, at 1519287 to 1521954 12536 mRNA_4169: 12537 - K13299 GSTK1 glutathione S-transferase kappa 1, at 1522602 to 1523728 12537

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,518,406 - 12535 mRNA_4167 0.38 0.4
1,518,424 - 12535 mRNA_4167 0.40 -0.2
1,518,558 - 12535 mRNA_4167 0.58 -0.7
1,518,690 + 12535 mRNA_4167 0.75 -1.0
1,518,692 + 12535 mRNA_4167 0.76 1.1
1,518,696 + 12535 mRNA_4167 0.76 1.5
1,518,956 + 0.7
1,518,958 - 0.0
1,518,962 - -0.0
1,518,966 + -2.0
1,518,967 + 1.7
1,518,975 - -0.4
1,518,985 - -0.1
1,518,992 + 0.3
1,519,013 + -1.5
1,519,034 - -0.9
1,519,041 - -1.6
1,519,426 + 0.2
1,519,618 + 12536 mRNA_4168 0.12 -0.5
1,519,738 + 12536 mRNA_4168 0.17 0.0
1,519,896 + 12536 mRNA_4168 0.23 -0.4
1,520,497 + 12536 mRNA_4168 0.45 0.3
1,520,592 - 12536 mRNA_4168 0.49 0.7
1,520,711 - 12536 mRNA_4168 0.53 -0.2
1,520,887 + 12536 mRNA_4168 0.60 -0.5
1,520,920 + 12536 mRNA_4168 0.61 -0.6
1,520,928 + 12536 mRNA_4168 0.62 -0.4
1,521,040 + 12536 mRNA_4168 0.66 -0.4
1,521,055 - 12536 mRNA_4168 0.66 -0.6
1,521,104 + 12536 mRNA_4168 0.68 -1.5
1,521,331 + 12536 mRNA_4168 0.77 -0.1
1,521,336 + 12536 mRNA_4168 0.77 -1.6
1,521,482 - 12536 mRNA_4168 0.82 0.2
1,521,929 - -0.7
1,522,195 - -1.1
1,522,225 + -1.1
1,522,357 - -3.1
1,522,366 - -0.2
1,522,368 - -0.7
1,522,373 - -0.5
1,522,386 - 0.2
1,522,389 + 0.4
1,522,522 - -1.5
1,522,532 + 0.6
1,522,539 + -0.4
1,522,540 - -0.9
1,522,591 + -0.7
1,522,847 + 12537 mRNA_4169 0.22 -1.2