Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4126

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4125: 12493 - KOG0627 Heat shock transcription factor, at 1407768 to 1409382 12493 mRNA_4126: 12494 - K20408 WDR24 WD repeat-containing protein 24, at 1410294 to 1414666 12494 mRNA_4127: 12495 - K00793 ribE, RIB5 riboflavin synthase, at 1415327 to 1416353 12495

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,409,341 - 1.4
1,409,351 + 0.0
1,409,361 - -0.5
1,409,435 - 0.2
1,409,437 - -2.4
1,409,438 + 0.0
1,409,439 - 0.6
1,409,445 + 0.3
1,409,447 + -0.3
1,409,460 + 0.1
1,409,463 - -0.3
1,409,463 + -0.1
1,409,463 + 0.9
1,409,466 + -0.5
1,409,467 - 0.8
1,409,468 - 1.5
1,409,469 - -2.2
1,409,469 - -0.3
1,409,470 - -0.5
1,409,472 + -0.3
1,409,473 + 0.3
1,409,474 - 0.5
1,409,475 + 1.6
1,409,475 + -0.8
1,409,475 + -0.0
1,409,476 + -0.3
1,409,477 + 0.4
1,409,481 + 1.8
1,409,485 + -1.2
1,409,488 + 0.5
1,409,514 + -0.7
1,409,520 - -1.3
1,409,521 + -1.5
1,409,583 - -0.4
1,409,595 + 1.7
1,409,601 - -1.1
1,409,614 + -1.6
1,409,614 + -0.3
1,409,617 + -0.3
1,409,618 - 0.2
1,409,619 - -0.4
1,409,620 - 0.3
1,409,624 - -1.1
1,409,625 - -0.4
1,409,627 - 0.6
1,409,627 + 0.5
1,409,628 + -0.2
1,409,634 + -0.8
1,409,647 + -0.8
1,409,654 - -0.4
1,409,676 + 1.9
1,409,711 - 3.3
1,409,714 - -1.3
1,409,733 - -0.8
1,409,749 - 0.4
1,409,760 - 0.1
1,409,760 + -0.3
1,409,763 - -0.7
1,409,764 - 1.9
1,409,778 - 0.6
1,409,781 + 0.3
1,409,785 + 1.2
1,409,798 - 1.9
1,409,798 - -0.2
1,409,798 - 0.5
1,409,798 - 0.5
1,409,800 + 1.5
1,409,801 + -0.5
1,409,831 - -0.6
1,409,897 - -1.6
1,409,907 + 0.3
1,409,908 - 0.1
1,409,927 - -0.4
1,409,928 + -0.2
1,409,929 + 0.4
1,409,932 - -0.0
1,409,934 - 0.9
1,409,940 - -0.6
1,409,963 - -0.2
1,409,965 + 0.6
1,409,974 - 0.5
1,409,998 + -1.9
1,410,029 - 1.9
1,410,044 + -1.1
1,410,044 + -0.2
1,410,045 - -0.4
1,410,047 + -1.4
1,410,050 + 0.1
1,410,064 - 0.3
1,410,070 + -1.2
1,410,077 - 0.0
1,410,090 - -3.0
1,410,092 + -0.5
1,410,096 + 1.1
1,410,118 + -0.4
1,410,123 - -0.2
1,410,142 - -2.9
1,410,151 + 0.7
1,410,155 + 1.8
1,410,197 - 1.5
1,410,203 + -0.4
1,410,218 - 0.1
1,410,223 - -0.5
1,410,236 + -0.2
1,410,237 - 1.0
1,410,248 + -0.5
1,410,256 - 0.8
1,410,257 + -0.0
1,410,258 - -0.9
1,410,364 - 1.0
1,410,365 + 1.0
1,410,369 - -0.9
1,410,389 - -0.1
1,410,399 + 1.8
1,410,401 + -0.2
1,410,406 + 1.1
1,410,408 - 0.2
1,410,417 - 1.3
1,410,430 + -0.8
1,410,462 - 1.9
1,410,486 + 0.2
1,410,562 - 0.1
1,410,577 + -0.7
1,410,597 + -0.3
1,410,718 - 0.0
1,410,731 + -0.8
1,410,732 + 12494 mRNA_4126 0.10 0.2
1,410,863 + 12494 mRNA_4126 0.13 -1.1
1,410,870 + 12494 mRNA_4126 0.13 0.2
1,410,879 - 12494 mRNA_4126 0.13 -0.0
1,410,982 - 12494 mRNA_4126 0.16 -0.6
1,411,011 + 12494 mRNA_4126 0.16 0.3
1,411,262 - 12494 mRNA_4126 0.22 0.1
1,411,299 - 12494 mRNA_4126 0.23 0.2
1,411,726 - 12494 mRNA_4126 0.33 -0.9
1,411,911 - 12494 mRNA_4126 0.37 -1.1
1,412,037 + 12494 mRNA_4126 0.40 0.7
1,412,054 - 12494 mRNA_4126 0.40 -0.1
1,412,381 - 12494 mRNA_4126 0.48 -3.4
1,412,381 + 12494 mRNA_4126 0.48 0.1
1,412,512 + 12494 mRNA_4126 0.51 1.3
1,412,625 - 12494 mRNA_4126 0.53 0.6
1,412,638 - 12494 mRNA_4126 0.54 -1.2
1,412,638 + 12494 mRNA_4126 0.54 1.1
1,412,646 + 12494 mRNA_4126 0.54 0.3
1,412,756 + 12494 mRNA_4126 0.56 -0.0
1,412,896 - 12494 mRNA_4126 0.60 2.0
1,412,967 + 12494 mRNA_4126 0.61 -0.5
1,413,246 + 12494 mRNA_4126 0.68 0.3
1,413,405 - 12494 mRNA_4126 0.71 -0.4
1,413,799 + 12494 mRNA_4126 0.80 -0.5
1,414,667 - 0.1
1,414,811 - 1.5
1,415,086 - -1.2
1,415,125 - 1.5
1,415,239 + 0.3
1,415,259 + -0.6