Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4123

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4122: 12490 - BLAST proteophosphoglycan ppg4 [Moniliophthora roreri M..., at 1400543 to 1402480 12490 mRNA_4123: 12491 - KOG4510 Permease of the drug/metabolite transporter (DMT) superfamily, at 1402766 to 1404670 12491 mRNA_4124: 12492 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SMART-A Receptor for Ubiquitination Targets-SM00256,SUPERFAMILY--SSF81383, at 1405556 to 1407296 12492

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,402,535 + 0.7
1,402,550 + 1.8
1,402,551 - -0.4
1,402,557 - -1.4
1,402,695 - 1.6
1,402,697 - 0.4
1,402,699 - -1.9
1,402,699 - 0.6
1,402,712 - -3.0
1,402,720 - -0.0
1,402,720 - -0.8
1,402,738 + 0.5
1,402,747 - 0.5
1,402,828 + 0.6
1,402,863 - -0.0
1,402,873 + 0.2
1,402,876 + -0.4
1,402,879 - 0.4
1,402,888 - 1.1
1,402,913 - 0.2
1,403,025 + 12491 mRNA_4123 0.14 1.6
1,403,044 + 12491 mRNA_4123 0.15 -1.4
1,403,163 - 12491 mRNA_4123 0.21 0.5
1,403,797 - 12491 mRNA_4123 0.54 0.2
1,404,188 - 12491 mRNA_4123 0.75 -0.5
1,404,666 - 0.6
1,404,809 + -1.5
1,405,098 + -0.3
1,405,111 - -1.0
1,405,243 + -0.6
1,405,276 + 0.9
1,405,578 - 0.5