Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4057

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4056: 12424 - BLAST tRNA(His) guanylyltransferase [Kwoniella heveanensis ..., at 1250945 to 1252332 12424 mRNA_4057: 12425 - Hypothetical Protein, at 1252817 to 1253970 12425 mRNA_4058: 12426 - HMMPfam-Transcription factor Pcc1-PF09341, at 1254805 to 1255288 12426

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,251,935 - 12424 mRNA_4056 0.71 0.8
1,252,092 - 12424 mRNA_4056 0.83 -0.2
1,252,098 - 12424 mRNA_4056 0.83 -0.9
1,252,271 + -0.8
1,252,556 + -2.0
1,252,686 + 1.0
1,252,848 - -1.5
1,253,032 + 12425 mRNA_4057 0.19 -0.9
1,253,186 + 12425 mRNA_4057 0.32 0.7
1,253,267 + 12425 mRNA_4057 0.39 -0.8
1,253,572 - 12425 mRNA_4057 0.65 -0.3
1,253,868 + -2.4
1,253,878 - -0.9
1,253,907 - 0.8
1,254,021 - 0.6
1,254,025 + -0.0
1,254,180 - 0.3
1,254,180 - 0.5
1,254,183 + -0.3
1,254,187 + 0.1
1,254,217 - 1.0
1,254,305 - -1.0
1,254,308 + 0.7
1,254,352 + 0.9
1,254,352 - -2.0
1,254,359 + -0.3
1,254,474 + 0.7
1,254,478 - 1.2
1,254,483 - 2.4
1,254,491 - -1.0
1,254,492 - 0.8
1,254,493 - -0.2
1,254,500 + 0.0
1,254,503 + 0.7
1,254,506 - 0.9
1,254,529 - 0.4
1,254,543 - -0.2
1,254,553 + 1.2
1,254,554 + 0.0
1,254,554 + -0.4
1,254,629 + -0.2
1,254,640 + 0.2
1,254,642 + 1.5
1,254,740 + -1.0
1,254,740 + -0.0
1,254,741 + 0.1
1,254,742 - -0.0
1,254,769 + -0.2
1,254,775 + 0.9