Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4045

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4044: 12412 - Hypothetical Protein, at 1225766 to 1226356 12412 mRNA_4045: 12413 - Hypothetical Protein, at 1226849 to 1229104 12413 mRNA_4046: 12414 - HMMPfam-Starch binding domain-PF00686,SUPERFAMILY--SSF49452, at 1229345 to 1230784 12414

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,225,914 - 12412 mRNA_4044 0.25 0.3
1,226,217 - 12412 mRNA_4044 0.76 1.5
1,226,253 + 12412 mRNA_4044 0.82 -0.3
1,226,325 + 1.3
1,226,352 + -0.3
1,226,493 + 0.5
1,226,947 + 0.0
1,227,424 - 12413 mRNA_4045 0.25 -2.3
1,227,792 + 12413 mRNA_4045 0.42 0.1
1,228,089 - 12413 mRNA_4045 0.55 -1.2
1,228,282 - 12413 mRNA_4045 0.64 -2.2
1,229,004 + 0.5
1,229,282 + -1.2
1,229,406 - 0.7
1,229,453 + -0.8
1,229,511 - 12414 mRNA_4046 0.12 -0.8
1,229,710 - 12414 mRNA_4046 0.25 0.7
1,229,727 + 12414 mRNA_4046 0.27 0.1
1,229,730 - 12414 mRNA_4046 0.27 0.6
1,229,743 + 12414 mRNA_4046 0.28 -0.4
1,229,749 + 12414 mRNA_4046 0.28 -0.9
1,229,853 - 12414 mRNA_4046 0.35 0.8
1,229,870 + 12414 mRNA_4046 0.36 -0.8
1,229,871 + 12414 mRNA_4046 0.37 -0.5
1,229,873 + 12414 mRNA_4046 0.37 -0.5
1,229,882 + 12414 mRNA_4046 0.37 -1.0
1,229,883 + 12414 mRNA_4046 0.37 -0.6
1,229,885 - 12414 mRNA_4046 0.38 -0.1
1,229,888 - 12414 mRNA_4046 0.38 1.1
1,229,905 - 12414 mRNA_4046 0.39 -0.1
1,229,910 + 12414 mRNA_4046 0.39 2.1
1,229,914 + 12414 mRNA_4046 0.40 -1.2
1,229,917 + 12414 mRNA_4046 0.40 -0.3
1,229,924 + 12414 mRNA_4046 0.40 0.6
1,229,925 + 12414 mRNA_4046 0.40 -1.1
1,229,933 - 12414 mRNA_4046 0.41 0.2
1,229,939 - 12414 mRNA_4046 0.41 0.4
1,230,060 - 12414 mRNA_4046 0.50 -1.6
1,230,062 - 12414 mRNA_4046 0.50 1.0
1,230,063 + 12414 mRNA_4046 0.50 -0.3
1,230,083 + 12414 mRNA_4046 0.51 -0.8