Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4043

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4042: 12410 - KOG0807 Carbon-nitrogen hydrolase, at 1222725 to 1223895 12410 mRNA_4043: 12411 - Hypothetical Protein, at 1224435 to 1225613 12411 mRNA_4044: 12412 - Hypothetical Protein, at 1225766 to 1226356 12412

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,223,741 + 12410 mRNA_4042 0.87 0.3
1,223,838 + 0.5
1,223,846 - -1.9
1,223,863 - 0.8
1,223,864 - -0.0
1,223,999 - -0.2
1,224,005 + 2.3
1,224,023 + 1.5
1,224,129 + -0.8
1,224,442 - 1.0
1,224,446 + 1.4
1,224,479 + -1.3
1,224,581 - 12411 mRNA_4043 0.12 -0.8
1,224,605 - 12411 mRNA_4043 0.14 -0.3
1,225,031 + 12411 mRNA_4043 0.51 -0.9
1,225,323 + 12411 mRNA_4043 0.75 0.5
1,225,573 - -0.7
1,225,613 + -0.8
1,225,914 - 12412 mRNA_4044 0.25 0.3
1,226,217 - 12412 mRNA_4044 0.76 1.5
1,226,253 + 12412 mRNA_4044 0.82 -0.3
1,226,325 + 1.3
1,226,352 + -0.3
1,226,493 + 0.5