Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4011

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4010: 12378 - HMMPfam-F-box-like-PF12937,ProSiteProfiles-F-box domain profile.-PS50181,SMART-A Receptor for Ubiquitination Targets-SM00256,SMART-Leucine-rich repeat - CC (cysteine-containing) subfamily-SM00367,SUPERFAMILY--SSF52047,SUPERFAMILY--SSF81383, at 1142539 to 1145554 12378 mRNA_4011: 12379 - HMMPfam-Retinoic acid induced 16-like protein-PF10257, at 1145939 to 1149704 12379 mRNA_4012: 12380 - KOG2370 Cactin, at 1149929 to 1152487 12380

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,145,169 - 12378 mRNA_4010 0.87 0.4
1,145,206 + 12378 mRNA_4010 0.88 -2.5
1,145,284 - 0.6
1,145,477 + -0.9
1,145,632 + 0.3
1,145,634 + -1.1
1,145,757 + -0.5
1,145,761 - 1.4
1,145,919 + 0.5
1,145,929 + 2.1
1,146,039 + -1.1
1,146,051 - -0.3
1,146,494 + 12379 mRNA_4011 0.15 1.2
1,146,642 - 12379 mRNA_4011 0.19 0.3
1,147,215 - 12379 mRNA_4011 0.34 -0.3
1,147,348 - 12379 mRNA_4011 0.37 0.1
1,147,985 - 12379 mRNA_4011 0.54 -0.4
1,148,147 + 12379 mRNA_4011 0.59 1.1
1,148,244 - 12379 mRNA_4011 0.61 -0.2
1,148,373 - 12379 mRNA_4011 0.65 -0.4
1,148,404 + 12379 mRNA_4011 0.65 -0.0
1,148,423 + 12379 mRNA_4011 0.66 -0.5
1,148,868 - 12379 mRNA_4011 0.78 0.5
1,148,983 + 12379 mRNA_4011 0.81 -1.4
1,149,021 - 12379 mRNA_4011 0.82 0.2
1,149,604 - -3.8
1,149,750 + -0.1
1,149,910 - -0.7