Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4009

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4008: 12376 - K03695 clpB ATP-dependent Clp protease ATP-binding subunit ClpB, at 1136733 to 1139810 12376 mRNA_4009: 12377 - K10639 CCNB1IP1, HEI10 E3 ubiquitin-protein ligase CCNP1IP1, at 1140211 to 1141922 12377 mRNA_4010: 12378 - HMMPfam-F-box-like-PF12937,ProSiteProfiles-F-box domain profile.-PS50181,SMART-A Receptor for Ubiquitination Targets-SM00256,SMART-Leucine-rich repeat - CC (cysteine-containing) subfamily-SM00367,SUPERFAMILY--SSF52047,SUPERFAMILY--SSF81383, at 1142539 to 1145554 12378

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,139,280 - 12376 mRNA_4008 0.83 -0.1
1,139,445 - 12376 mRNA_4008 0.88 2.9
1,139,565 + 1.4
1,139,575 + 0.1
1,139,602 - 0.8
1,139,715 - -0.0
1,139,739 - -0.4
1,139,833 - -0.7
1,139,836 + -1.0
1,139,841 - 0.6
1,139,865 + 1.8
1,139,876 - -2.9
1,139,880 + -0.8
1,139,898 - 2.0
1,139,908 - -0.5
1,139,917 + 0.5
1,139,930 + 0.2
1,139,944 - 1.2
1,139,947 - 2.8
1,139,981 - -1.0
1,139,997 + 1.1
1,140,001 - -0.4
1,140,006 + 1.8
1,140,007 + 0.5
1,140,008 - -1.2
1,140,013 - -2.1
1,140,025 + -0.5
1,140,033 + 1.0
1,140,039 + 1.7
1,140,061 + -0.1
1,140,074 - -0.5
1,140,114 - 0.6
1,140,118 - 0.2
1,140,119 + 0.2
1,140,119 + -1.1
1,140,129 + 1.1
1,140,130 + 0.0
1,140,204 - 0.7
1,140,205 - 0.1
1,140,210 + -0.4
1,140,363 + 0.5
1,140,948 - 12377 mRNA_4009 0.43 0.3
1,141,532 - 12377 mRNA_4009 0.77 0.2
1,141,655 + 12377 mRNA_4009 0.84 2.5
1,142,815 - -1.0