Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3991

Experiments: 40 hrs No Buoyancy Separation

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3990: 12358 - K07561 DPH1, dph2 2-(3-amino-3-carboxypropyl)histidine synthase, at 1087567 to 1089527 12358 mRNA_3991: 12359 - KOG1012 Ca2+-dependent lipid-binding protein CLB1/vesicle protein vp115/Granuphilin A, contains C2 domain, at 1089725 to 1094754 12359 mRNA_3992: 12360 - KOG0627 Heat shock transcription factor, at 1095676 to 1096761 12360

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
remove
1,089,465 + -1.1
1,089,480 + -1.4
1,089,944 - -2.4
1,090,396 + 12359 mRNA_3991 0.13 0.9
1,090,655 + 12359 mRNA_3991 0.18 2.8
1,090,816 + 12359 mRNA_3991 0.22 2.6
1,091,643 - 12359 mRNA_3991 0.38 -0.1
1,091,852 + 12359 mRNA_3991 0.42 -0.6
1,091,856 - 12359 mRNA_3991 0.42 -0.0
1,093,010 - 12359 mRNA_3991 0.65 0.6
1,093,170 + 12359 mRNA_3991 0.68 -0.2
1,093,189 + 12359 mRNA_3991 0.69 -0.9
1,093,373 + 12359 mRNA_3991 0.73 -1.8
1,093,722 + 12359 mRNA_3991 0.79 0.6
1,093,880 - 12359 mRNA_3991 0.83 1.3
1,094,193 + 12359 mRNA_3991 0.89 0.6
1,094,316 + 1.5
1,094,347 + 0.4
1,094,463 + 0.7
1,094,468 - -0.8
1,094,470 - -0.3
1,094,472 - 1.1
1,094,484 + -0.3
1,094,491 + 0.4
1,094,597 - -0.0
1,094,627 - -0.4
1,094,628 + -0.4
1,094,631 - 0.7
1,094,643 - -0.4
1,094,644 - -0.1
1,094,651 - 1.0
1,094,753 - 0.9
1,094,778 - -0.0
1,094,782 + -1.0
1,094,786 + 1.5
1,094,791 - -0.1
1,094,799 - 0.5
1,094,807 - -0.7
1,094,812 - -0.3
1,094,813 + -1.1
1,094,815 - 0.2
1,094,815 - -0.5
1,094,815 - -0.1
1,094,820 - 1.2
1,094,822 - -0.7
1,094,823 - -0.2
1,094,824 - 2.2
1,094,826 - -0.8
1,094,831 + -0.9
1,094,841 + 2.0
1,094,849 + -0.1
1,094,851 - 0.5
1,094,861 - -0.3
1,094,862 - -0.4
1,094,895 - 1.2
1,094,937 + -0.7
1,095,030 - 0.1
1,095,032 + -1.3
1,095,041 + 0.8
1,095,043 + 0.7
1,095,044 - 0.3
1,095,050 - 0.3
1,095,051 + -0.1
1,095,058 + -0.2
1,095,080 - 0.1
1,095,083 + -1.1
1,095,083 + 0.3
1,095,200 - -0.3
1,095,202 + -0.5
1,095,203 + 0.7
1,095,211 - -1.1
1,095,221 + -0.1
1,095,222 + 0.1
1,095,238 + 0.4
1,095,240 + -1.4
1,095,251 - 3.1
1,095,271 + 1.0
1,095,294 - 0.2
1,095,309 - 0.3
1,095,315 + -0.5
1,095,317 + -0.2
1,095,326 - -0.1
1,095,333 - 0.3
1,095,337 - -0.6
1,095,343 - 0.9
1,095,343 - 0.1
1,095,347 - -0.6
1,095,349 - 0.0
1,095,367 + 0.2
1,095,464 + -0.7
1,095,480 - 0.6
1,095,480 + -2.3
1,095,482 - 1.1
1,095,485 + -0.5
1,095,485 + 0.8
1,095,508 + -1.5
1,095,509 - -0.3
1,095,512 - -0.8
1,095,532 + 0.4
1,095,614 + 0.6
1,095,622 - -0.2
1,095,628 - 0.4
1,095,631 - -0.6
1,095,632 - 0.6
1,095,632 - 0.3
1,095,652 - -0.0
1,095,659 + 0.5
1,095,660 - 1.6
1,095,667 + -0.7