Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3984

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3984: 12352 - Hypothetical Protein, at 1073913 to 1075521 12352 mRNA_3985: 12353 - K03448 FEN2, LIZ1 MFS transporter, ACS family, pantothenate transporter, at 1076249 to 1078580 12353

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,072,927 + -0.7
1,072,929 + 1.1
1,073,054 - -1.6
1,073,070 - 1.2
1,073,388 + -0.7
1,073,638 + -1.4
1,074,269 + 12352 mRNA_3984 0.22 -1.0
1,074,270 + 12352 mRNA_3984 0.22 0.1
1,074,466 - 12352 mRNA_3984 0.34 -0.7
1,074,624 + 12352 mRNA_3984 0.44 -0.2
1,074,689 - 12352 mRNA_3984 0.48 -2.1
1,074,871 + 12352 mRNA_3984 0.60 1.9
1,074,880 + 12352 mRNA_3984 0.60 0.3
1,074,999 + 12352 mRNA_3984 0.67 -1.1
1,075,001 + 12352 mRNA_3984 0.68 -0.4
1,075,147 - 12352 mRNA_3984 0.77 -1.2
1,075,151 + 12352 mRNA_3984 0.77 -0.1
1,075,152 - 12352 mRNA_3984 0.77 0.2
1,075,161 + 12352 mRNA_3984 0.78 -0.3
1,075,168 + 12352 mRNA_3984 0.78 2.4
1,075,175 - 12352 mRNA_3984 0.78 -3.9
1,075,184 + 12352 mRNA_3984 0.79 -0.9
1,075,282 - 12352 mRNA_3984 0.85 -0.4
1,075,314 - 12352 mRNA_3984 0.87 1.9
1,075,326 + 12352 mRNA_3984 0.88 -0.8
1,075,332 + 12352 mRNA_3984 0.88 0.4
1,075,463 - -1.2
1,075,464 + -0.5
1,075,465 - 0.0
1,075,466 - 0.1
1,075,471 + -1.4
1,075,473 + 1.0
1,075,486 + 0.1
1,075,492 + 0.3
1,075,495 + -0.4
1,075,623 - -0.9
1,075,628 - 0.5
1,075,647 + -0.0
1,075,667 + 0.0
1,075,671 - 0.1
1,075,671 - 2.8
1,075,674 + 0.2
1,075,676 - -1.6
1,075,678 - 1.6
1,075,694 + 0.7
1,075,698 - -1.1
1,075,727 - 1.2
1,075,927 + 0.2
1,075,938 - 1.1
1,075,947 - -0.7
1,075,952 + -0.3
1,075,953 + 0.0
1,075,994 + 0.9
1,076,112 - -2.2
1,076,135 - 1.1