Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3983

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3982: 12350 - K19525 VPS13A_C vacuolar protein sorting-associated protein 13A/C, at 1059957 to 1071266 12350 mRNA_3983: 12351 - HMMPfam-Mpv17 / PMP22 family-PF04117, at 1071733 to 1072892 12351

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,071,371 - 1.0
1,071,377 - 1.1
1,071,378 - -1.1
1,071,378 - 2.0
1,071,378 - -1.4
1,071,378 - -0.6
1,071,378 - -1.3
1,071,382 - 0.3
1,071,384 - -0.1
1,071,385 + -0.3
1,071,386 - -1.2
1,071,388 + 0.1
1,071,388 + 2.1
1,071,388 + 0.3
1,071,388 + -0.4
1,071,391 - -2.0
1,071,393 + -0.5
1,071,408 + 0.2
1,071,409 + 0.2
1,071,410 + -0.2
1,071,410 - 1.4
1,071,419 + -2.3
1,071,528 - -1.4
1,071,535 + 0.0
1,071,536 + 0.3
1,071,542 - -0.3
1,071,549 - -0.7
1,071,550 + -0.9
1,071,556 + 1.7
1,071,557 - 0.0
1,071,566 + -0.5
1,071,687 - 0.3
1,071,714 + -0.0
1,071,721 - -0.2
1,071,847 + -0.0
1,072,003 + 12351 mRNA_3983 0.23 -0.2
1,072,217 - 12351 mRNA_3983 0.42 -1.8
1,072,598 - 12351 mRNA_3983 0.75 -0.4
1,072,612 + 12351 mRNA_3983 0.76 -0.0
1,072,625 + 12351 mRNA_3983 0.77 -0.1
1,072,627 + 12351 mRNA_3983 0.77 -0.1
1,072,903 - 1.5
1,072,927 + -0.7
1,072,929 + 1.1
1,073,054 - -1.6
1,073,070 - 1.2
1,073,388 + -0.7
1,073,638 + -1.4