Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3946

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3945: 12313 - HMMPfam-Protein of unknown function (DUF2422)-PF10337, at 963699 to 967662 12313 mRNA_3946: 12314 - K06176 truD, PUS7 tRNA pseudouridine13 synthase, at 967876 to 970743 12314 mRNA_3947: 12315 - KOG1502 Flavonol reductase/cinnamoyl-CoA reductase, at 970867 to 972281 12315

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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966,921 - 12313 mRNA_3945 0.81 -0.0
967,020 + 12313 mRNA_3945 0.84 0.6
967,636 - 0.4
967,759 + 1.2
967,909 + 0.5
968,235 + 12314 mRNA_3946 0.13 -0.7
968,527 - 12314 mRNA_3946 0.23 -0.3
968,539 - 12314 mRNA_3946 0.23 -0.2
969,609 + 12314 mRNA_3946 0.60 -0.1
969,741 - 12314 mRNA_3946 0.65 -1.6
970,443 - 12314 mRNA_3946 0.90 -0.1
970,448 + 12314 mRNA_3946 0.90 -1.1
970,456 - 12314 mRNA_3946 0.90 0.3
970,596 + -0.1
970,727 + 1.8
970,730 - 0.2
970,740 + 0.5
970,740 - 0.7
970,744 + -1.7
970,784 + -1.3
970,790 + -2.3
970,791 - -0.1
970,795 - -2.1
970,799 - -0.2
970,817 + 0.4
970,818 - 1.7
970,825 + -0.0
970,914 - 1.6
970,947 + 0.5
971,098 - 12315 mRNA_3947 0.16 0.7
971,104 - 12315 mRNA_3947 0.17 3.0
971,104 - 12315 mRNA_3947 0.17 -1.4
971,121 + 12315 mRNA_3947 0.18 1.0
971,250 - 12315 mRNA_3947 0.27 1.9
971,667 - 12315 mRNA_3947 0.57 2.2
971,677 + 12315 mRNA_3947 0.57 -0.8