Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3931

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3930: 12298 - Hypothetical Protein, at 929708 to 931043 12298 mRNA_3931: 12299 - BLAST protein [Lichtheimia corymbifera JMRC-FSU-9682], at 931506 to 935642 12299 mRNA_3932: 12300 - K18532 AK6, FAP7 adenylate kinase, at 935952 to 936713 12300

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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930,514 + 12298 mRNA_3930 0.60 1.6
930,527 + 12298 mRNA_3930 0.61 -1.5
930,982 + 0.0
931,086 + 0.7
931,088 + -0.6
931,232 + 1.6
931,234 + 0.3
931,241 + -0.9
931,270 + -0.3
931,379 - -0.7
931,403 - -1.8
931,407 + 0.0
931,412 + 1.3
931,427 - -2.0
931,429 + 1.5
931,433 - -0.7
931,450 + 0.3
931,699 + -0.9
931,866 + 0.1
931,890 + 0.4
931,896 - 0.8
932,001 + 12299 mRNA_3931 0.12 -0.1
932,602 - 12299 mRNA_3931 0.26 -1.3
932,920 - 12299 mRNA_3931 0.34 -0.8
933,501 + 12299 mRNA_3931 0.48 -1.0
933,630 - 12299 mRNA_3931 0.51 0.7
933,999 + 12299 mRNA_3931 0.60 -2.1
934,025 - 12299 mRNA_3931 0.61 -1.5
934,402 - 12299 mRNA_3931 0.70 0.4
934,554 - 12299 mRNA_3931 0.74 0.5
934,566 - 12299 mRNA_3931 0.74 0.8
934,595 + 12299 mRNA_3931 0.75 0.0
935,160 + 12299 mRNA_3931 0.88 1.5
935,176 + 12299 mRNA_3931 0.89 1.2
935,774 + -0.2
935,945 - -0.3