Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3920

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3919: 12287 - KOG4020 Protein DRE2, required for cell viability, at 897887 to 899209 12287 mRNA_3920: 12288 - K12767 RIM15 serine/threonine-protein kinase RIM15, at 899540 to 908734 12288

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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899,255 + 0.2
899,289 + 0.6
899,293 + -0.0
899,400 + 1.6
899,426 + -1.0
900,000 + 1.3
900,153 - -1.3
900,160 - 0.1
900,311 - 1.2
900,562 + 12288 mRNA_3920 0.11 1.3
900,763 - 12288 mRNA_3920 0.13 1.4
901,485 + 12288 mRNA_3920 0.21 -1.2
901,496 + 12288 mRNA_3920 0.21 0.5
901,909 + 12288 mRNA_3920 0.26 -0.2
902,151 - 12288 mRNA_3920 0.28 0.8
902,538 - 12288 mRNA_3920 0.33 2.5
902,580 + 12288 mRNA_3920 0.33 1.1
902,666 - 12288 mRNA_3920 0.34 -0.4
903,121 + 12288 mRNA_3920 0.39 -1.0
903,256 - 12288 mRNA_3920 0.40 0.7
903,537 + 12288 mRNA_3920 0.43 1.4
903,573 + 12288 mRNA_3920 0.44 -1.5
903,694 - 12288 mRNA_3920 0.45 1.7
903,819 - 12288 mRNA_3920 0.47 1.2
903,929 - 12288 mRNA_3920 0.48 -1.6
904,010 - 12288 mRNA_3920 0.49 0.0
904,076 - 12288 mRNA_3920 0.49 -0.8
904,210 + 12288 mRNA_3920 0.51 -1.0
904,250 + 12288 mRNA_3920 0.51 0.5
904,305 - 12288 mRNA_3920 0.52 -1.1
904,781 + 12288 mRNA_3920 0.57 0.1
904,941 + 12288 mRNA_3920 0.59 -0.7
905,028 + 12288 mRNA_3920 0.60 -2.8
905,061 - 12288 mRNA_3920 0.60 2.0
905,076 - 12288 mRNA_3920 0.60 -0.8
905,106 + 12288 mRNA_3920 0.61 2.5
905,219 - 12288 mRNA_3920 0.62 1.0
905,346 + 12288 mRNA_3920 0.63 -2.1
905,385 - 12288 mRNA_3920 0.64 -1.4
905,720 - 12288 mRNA_3920 0.67 -1.5
907,285 - 12288 mRNA_3920 0.84 -1.3
907,294 - 12288 mRNA_3920 0.84 -0.3
907,300 + 12288 mRNA_3920 0.84 -2.7
907,779 + 12288 mRNA_3920 0.90 0.3
908,313 + -1.8
908,422 - -1.1
908,447 - -0.9
908,593 - -0.2
908,608 + 0.2
908,645 - 1.5
908,754 + -1.2
908,772 + 0.2
908,782 + -0.0
908,782 + 0.9
908,787 - -2.1
908,788 + 0.0
908,932 - 0.2
908,933 - -1.5
908,993 + 0.5
909,062 + -0.6
909,070 - -0.3
909,078 - -2.4
909,080 - -0.2
909,141 + -1.6
909,237 - 0.8
909,367 + -0.5
909,390 - 0.5
909,407 + 1.1
909,507 + 2.6
909,519 - -0.3
909,519 - 0.2
909,560 + 0.9
909,657 + 0.3