Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3907

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3906: 12274 - K03495 gidA, mnmG, MTO1 tRNA uridine 5-carboxymethylaminomethyl modification enzyme, at 865746 to 868815 12274 mRNA_3907: 12275 - Hypothetical Protein, at 869074 to 869751 12275 mRNA_3908: 12276 - Interpro Protein of unknown function (DUF2945), at 870118 to 872012 12276

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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868,276 + 12274 mRNA_3906 0.82 0.3
868,299 - 12274 mRNA_3906 0.83 2.1
868,418 - 12274 mRNA_3906 0.87 -0.4
868,555 + 1.5
868,690 - 0.2
868,702 + 1.2
868,878 + 0.7
869,005 - 0.3
869,017 + 2.9
869,164 - 12275 mRNA_3907 0.13 -1.3
869,182 + 12275 mRNA_3907 0.16 -1.1
869,184 - 12275 mRNA_3907 0.16 -0.5
869,782 + -1.3
869,885 - 0.5
870,154 + 0.4
870,195 - 0.4
870,272 - -1.0
870,295 - 0.3
870,297 + 0.6
870,321 - 12276 mRNA_3908 0.11 -1.7
870,327 - 12276 mRNA_3908 0.11 -0.7
870,328 + 12276 mRNA_3908 0.11 -1.2
870,330 + 12276 mRNA_3908 0.11 0.2
870,330 + 12276 mRNA_3908 0.11 -0.3
870,345 + 12276 mRNA_3908 0.12 -1.2
870,347 - 12276 mRNA_3908 0.12 0.6
870,348 + 12276 mRNA_3908 0.12 -0.5
870,348 + 12276 mRNA_3908 0.12 -1.4
870,348 - 12276 mRNA_3908 0.12 1.1
870,375 - 12276 mRNA_3908 0.14 -0.3
870,378 - 12276 mRNA_3908 0.14 -1.2
870,403 - 12276 mRNA_3908 0.15 1.0
870,489 + 12276 mRNA_3908 0.20 1.0
870,505 + 12276 mRNA_3908 0.20 0.4
870,509 - 12276 mRNA_3908 0.21 0.0
870,517 - 12276 mRNA_3908 0.21 -0.3
870,520 - 12276 mRNA_3908 0.21 0.4
870,531 + 12276 mRNA_3908 0.22 0.3
870,541 + 12276 mRNA_3908 0.22 0.0
870,563 - 12276 mRNA_3908 0.23 0.4
870,679 + 12276 mRNA_3908 0.30 -0.4
870,707 + 12276 mRNA_3908 0.31 -0.4
870,715 + 12276 mRNA_3908 0.32 1.8