Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3904

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3903: 12271 - K01273 DPEP membrane dipeptidase, at 857570 to 859111 12271 mRNA_3904: 12272 - KOG1176 Acyl-CoA synthetase, at 859161 to 861426 12272 mRNA_3905: 12273 - KOG0118 FOG RRM domain, at 862046 to 863996 12273

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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858,266 - 12271 mRNA_3903 0.45 -1.1
858,291 + 12271 mRNA_3903 0.47 1.7
858,294 - 12271 mRNA_3903 0.47 1.7
858,744 + 12271 mRNA_3903 0.76 -1.8
858,795 + 12271 mRNA_3903 0.79 -0.8
859,010 + 0.9
859,262 - 1.6
859,540 - 12272 mRNA_3904 0.17 -0.5
859,617 + 12272 mRNA_3904 0.20 -1.0
859,736 - 12272 mRNA_3904 0.25 1.7
859,751 - 12272 mRNA_3904 0.26 0.3
859,759 + 12272 mRNA_3904 0.26 2.5
860,077 - 12272 mRNA_3904 0.40 -0.7
860,186 - 12272 mRNA_3904 0.45 3.0
860,318 + 12272 mRNA_3904 0.51 0.0
860,630 - 12272 mRNA_3904 0.65 1.8
860,745 - 12272 mRNA_3904 0.70 -0.4
860,889 + 12272 mRNA_3904 0.76 -0.6
860,954 + 12272 mRNA_3904 0.79 0.4
860,963 + 12272 mRNA_3904 0.80 -1.9
861,071 - 12272 mRNA_3904 0.84 -1.2
861,499 - 0.5
861,702 + -2.0
862,112 - -0.7
862,377 + 12273 mRNA_3905 0.17 1.2