Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3898

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3897: 12265 - K00459 ncd2, npd nitronate monooxygenase, at 846105 to 847395 12265 mRNA_3898: 12266 - HMMPfam-Acetyltransferase (GNAT) domain-PF13508,ProSiteProfiles-Gcn5-related N-acetyltransferase (GNAT) domain profile.-PS51186,SUPERFAMILY--SSF55729, at 848183 to 849090 12266 mRNA_3899: 12267 - HMMPfam-Acetyltransferase (GNAT) family-PF00583,ProSiteProfiles-Gcn5-related N-acetyltransferase (GNAT) domain profile.-PS51186,SUPERFAMILY--SSF55729, at 849422 to 850420 12267

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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847,323 - -1.3
847,603 - -0.9
847,605 + -1.6
847,617 + -0.5
847,745 - -0.7
847,751 - -0.5
847,756 - -0.2
847,756 + 0.6
847,763 - 0.1
847,769 + -0.3
847,772 + -2.1
847,777 - 1.3
847,787 + -0.7
847,791 + 0.8
847,803 - 0.3
847,825 + 1.1
847,831 - -0.6
847,886 + -2.2
847,905 - -0.2
847,917 - 0.9
847,931 - -0.6
847,933 + -1.3
847,984 - -2.4
848,091 - -0.2
848,310 - 12266 mRNA_3898 0.14 -1.7
848,659 - 12266 mRNA_3898 0.52 -0.8
848,821 + 12266 mRNA_3898 0.70 -2.3
848,948 - 12266 mRNA_3898 0.84 1.2
849,792 - 12267 mRNA_3899 0.37 0.6