Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3897

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3896: 12264 - BLAST F-box domain containing protein [Metarhizium maju..., at 844807 to 845932 12264 mRNA_3897: 12265 - K00459 ncd2, npd nitronate monooxygenase, at 846105 to 847395 12265 mRNA_3898: 12266 - HMMPfam-Acetyltransferase (GNAT) domain-PF13508,ProSiteProfiles-Gcn5-related N-acetyltransferase (GNAT) domain profile.-PS51186,SUPERFAMILY--SSF55729, at 848183 to 849090 12266

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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845,136 - 12264 mRNA_3896 0.29 0.7
845,300 - 12264 mRNA_3896 0.44 -1.8
845,431 + 12264 mRNA_3896 0.55 -1.2
845,696 + 12264 mRNA_3896 0.79 -0.4
845,729 + 12264 mRNA_3896 0.82 0.1
845,812 - 12264 mRNA_3896 0.89 -1.7
845,848 + 0.0
846,204 + 1.7
846,456 - 12265 mRNA_3897 0.27 -2.0
846,595 - 12265 mRNA_3897 0.38 0.2
847,005 + 12265 mRNA_3897 0.70 0.7
847,323 - -1.3
847,603 - -0.9
847,605 + -1.6
847,617 + -0.5
847,745 - -0.7
847,751 - -0.5
847,756 - -0.2
847,756 + 0.6
847,763 - 0.1
847,769 + -0.3
847,772 + -2.1
847,777 - 1.3
847,787 + -0.7
847,791 + 0.8
847,803 - 0.3
847,825 + 1.1
847,831 - -0.6
847,886 + -2.2
847,905 - -0.2
847,917 - 0.9
847,931 - -0.6
847,933 + -1.3
847,984 - -2.4
848,091 - -0.2
848,310 - 12266 mRNA_3898 0.14 -1.7