Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3885

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3885: 12253 - K00773 tgt, QTRT1 queuine tRNA-ribosyltransferase, at 822787 to 823648 12253 mRNA_3886: 12254 - K14298 RAE1, GLE2 mRNA export factor, at 823913 to 825750 12254

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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821,791 - 0.9
821,794 - 0.1
821,803 - 0.2
821,809 + -0.6
821,811 - 1.5
821,811 - 0.2
821,814 - -0.3
821,822 - 0.2
821,835 - 0.5
821,836 + 0.5
821,841 - 2.4
821,845 + -0.8
821,849 - -2.1
821,857 - 0.7
821,866 - 1.0
821,875 - -0.4
821,876 + -3.9
821,880 - 0.5
821,881 + -1.5
821,884 + 0.0
821,896 + 0.1
821,898 - 1.1
821,899 - 0.1
821,900 - 1.0
821,902 - -0.7
821,903 + 0.7
821,907 - 0.3
821,910 - 0.0
821,910 + -0.3
821,916 - -0.8
821,918 + -0.1
821,924 - 0.5
821,925 - -1.3
821,926 + -1.7
821,931 - -2.4
821,931 + -1.0
821,935 - 2.5
821,939 - -0.4
821,940 + -0.3
821,951 - -0.5
821,954 + 0.8
821,955 - -0.3
821,962 + 0.6
821,964 - 0.4
821,967 - -0.5
821,967 + 0.3
821,970 + 0.4
821,976 + -1.1
821,988 - 0.5
821,989 + 1.0
821,999 + -0.7
821,999 - 1.4
822,026 + -0.5
822,028 - -0.3
822,042 + -1.8
822,048 + 0.1
822,061 + 0.5
822,063 - -1.7
822,068 + -0.2
822,069 + -0.5
822,071 - 0.0
822,072 - -0.3
822,079 - -2.2
822,082 - -0.1
822,082 + -0.3
822,083 - -0.7
822,084 - 1.8
822,086 - -0.8
822,087 + -0.4
822,094 + -0.2
822,097 - 2.5
822,105 + -0.1
822,105 + -0.1
822,115 - -0.1
822,117 + -0.6
822,119 - -0.6
822,127 + -1.5
822,155 + -0.2
822,159 + -1.1
822,166 - -0.0
822,187 - 0.3
822,192 + -0.7
822,197 + 0.9
822,197 - 0.9
822,213 - 0.5
822,220 + -0.6
822,224 - 1.2
822,229 + 0.4
822,246 - -0.3
822,247 - 0.1
822,257 - -1.1
822,257 - -1.3
822,260 + 0.4
822,262 - 0.8
822,265 - -0.0
822,266 + 1.0
822,290 + 0.4
822,299 - -0.2
822,300 - 0.3
822,305 - 1.7
822,311 - -0.7
822,313 + 0.4
822,314 + 1.1
822,320 + -0.1
822,325 - 0.3
822,325 - -2.1
822,330 + -0.2
822,370 - -1.2
822,374 - 1.7
822,376 + 0.4
822,384 + 0.4
822,392 - -1.2
822,400 + -0.7
822,407 - -0.5
822,413 + 0.5
822,445 + 0.4
822,457 - 0.1
822,462 + 1.3
822,470 - -0.9
822,473 + -0.2
822,484 + 0.0
822,485 - 0.1
822,485 - -0.8
822,486 + 0.2
822,495 + -0.2
822,495 - -1.2
822,515 - 1.0
822,530 - 0.9
822,531 - -0.9
822,532 + 0.0
822,534 + -2.9
822,545 + -0.1
822,554 - -0.4
822,559 + 0.0
822,559 - -0.5
822,563 + -0.2
822,569 - -1.5
822,588 + 0.7
822,591 + -1.6
822,600 + 0.7
822,611 + 0.2
822,613 + -0.6
822,614 - 1.7
822,621 - 0.4
822,621 - 1.3
822,621 - -2.2
822,624 + 1.7
822,631 - 0.9
822,638 + 0.5
822,640 - -0.6
822,657 - 1.5
822,676 + -0.1
822,757 + -1.0
822,784 - -0.0
822,787 + 0.4
822,787 - 0.4
823,082 + 12253 mRNA_3885 0.34 0.6
823,096 + 12253 mRNA_3885 0.36 -2.1
823,237 + 12253 mRNA_3885 0.52 0.5
823,241 + 12253 mRNA_3885 0.53 -1.8
823,309 + 12253 mRNA_3885 0.61 -0.6
823,551 + 12253 mRNA_3885 0.89 0.0
823,699 - -1.1
824,026 - 0.2
824,306 - 12254 mRNA_3886 0.21 -1.5
824,402 + 12254 mRNA_3886 0.27 -0.8
824,405 - 12254 mRNA_3886 0.27 -0.0
824,421 - 12254 mRNA_3886 0.28 -2.1