Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3881

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3880: 12248 - K00262 E1.4.1.4, gdhA glutamate dehydrogenase (NADP+), at 812217 to 813988 12248 mRNA_3881: 12249 - Hypothetical Protein, at 814368 to 814862 12249 mRNA_3882: 12250 - Hypothetical Protein, at 815200 to 816864 12250

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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813,371 - 12248 mRNA_3880 0.65 -0.8
813,668 + 12248 mRNA_3880 0.82 -3.2
813,906 - -1.3
813,937 + -2.0
814,071 + 0.7
814,073 + -1.1
814,079 - 0.1
814,086 - 1.1
814,086 - 0.3
814,093 - -1.0
814,094 + -0.5
814,095 + -2.4
814,098 - 0.5
814,110 - 0.2
814,113 + 0.0
814,119 - -0.2
814,121 + 0.1
814,128 + -0.1
814,137 - 1.4
814,138 - -0.7
814,144 + 0.1
814,152 - -0.1
814,154 - -1.2
814,162 + -1.8
814,162 - 0.8
814,171 - 0.7
814,189 - 0.4
814,197 + 1.0
814,304 + -2.0
814,305 - -1.1
814,316 + 1.0
814,317 - 0.1
814,320 - 1.0
814,333 + -0.2
814,334 + -0.4
814,356 + -0.1
814,386 - -0.5
814,398 - 1.3
814,402 - 0.4
814,405 + 0.7
814,421 - 12249 mRNA_3881 0.11 -0.6
814,422 + 12249 mRNA_3881 0.11 -2.5
814,472 - 12249 mRNA_3881 0.21 -1.3
814,477 + 12249 mRNA_3881 0.22 -0.5
814,478 - 12249 mRNA_3881 0.22 -0.8
814,492 - 12249 mRNA_3881 0.25 0.9
814,492 + 12249 mRNA_3881 0.25 -0.8
814,499 + 12249 mRNA_3881 0.26 0.8
814,506 - 12249 mRNA_3881 0.28 1.0
814,529 - 12249 mRNA_3881 0.33 -0.3
814,539 + 12249 mRNA_3881 0.35 0.3
814,582 - 12249 mRNA_3881 0.43 -1.4
814,651 - 12249 mRNA_3881 0.57 0.9
814,799 - 12249 mRNA_3881 0.87 -0.2
814,806 - 12249 mRNA_3881 0.88 2.8
814,806 - 12249 mRNA_3881 0.88 0.2
814,942 + -0.5
814,943 - -1.3
814,951 - 1.4
814,973 + 0.1
815,124 - -0.1
815,731 + 12250 mRNA_3882 0.32 -0.1
815,856 + 12250 mRNA_3882 0.39 -1.1