Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3871

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3870: 12238 - HMMPfam-Nucleotide-diphospho-sugar transferase-PF03407,SUPERFAMILY--SSF53448, at 789914 to 792634 12238 mRNA_3871: 12239 - K10295 FBXO9 F-box protein 9, at 792939 to 793930 12239 mRNA_3872: 12240 - KOG1001 Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily, at 794856 to 799909 12240

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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792,079 - 12238 mRNA_3870 0.80 -0.1
792,143 + 12238 mRNA_3870 0.82 -0.7
792,238 - 12238 mRNA_3870 0.85 -3.4
792,240 + 12238 mRNA_3870 0.85 -2.0
792,245 - 12238 mRNA_3870 0.86 -0.3
792,246 - 12238 mRNA_3870 0.86 0.2
792,264 - 12238 mRNA_3870 0.86 0.2
792,403 - 0.3
792,405 + 0.5
792,419 + 1.8
792,420 - -1.8
792,548 + -0.0
792,553 + -2.2
792,560 - 0.2
792,595 - 0.4
792,608 - -0.6
792,680 - -1.2
792,698 - -1.2
792,700 - 0.2
792,731 - 1.3
792,733 + 0.1
792,757 - 0.2
792,765 + 1.0
792,856 + 0.2
792,879 + -2.8
792,900 - -0.7
792,938 - 2.3
792,950 - 0.2
792,951 + -0.9
793,072 + 12239 mRNA_3871 0.13 -0.2
793,240 - 12239 mRNA_3871 0.30 3.1
793,269 - 12239 mRNA_3871 0.33 -0.2
793,361 + 12239 mRNA_3871 0.43 0.3
793,376 - 12239 mRNA_3871 0.44 -0.4
793,423 + 12239 mRNA_3871 0.49 -0.2
793,449 - 12239 mRNA_3871 0.51 -1.0
793,491 - 12239 mRNA_3871 0.56 -0.4
793,498 - 12239 mRNA_3871 0.56 0.3
793,506 + 12239 mRNA_3871 0.57 2.2
793,507 + 12239 mRNA_3871 0.57 -1.7
793,518 + 12239 mRNA_3871 0.58 -1.3
793,525 + 12239 mRNA_3871 0.59 -0.9
793,677 - 12239 mRNA_3871 0.74 -0.2
793,710 - 12239 mRNA_3871 0.78 -0.7
793,744 - 12239 mRNA_3871 0.81 0.3
793,795 + 12239 mRNA_3871 0.86 -0.1
793,805 + 12239 mRNA_3871 0.87 -0.1
793,843 - 1.6
794,074 + -0.1
794,101 + -0.2
794,101 + 0.4
794,193 + -1.9
794,211 - 0.3
794,484 - -0.8
794,488 - 1.0
794,500 + -0.9
794,657 - -1.3
794,671 - -0.7
794,673 + -3.3
794,691 - -0.4
794,696 - -1.2
794,841 + -2.9