Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3851

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3850: 12218 - BLAST Protein kinase-like domain protein [Cordyceps confrag..., at 738675 to 741507 12218 mRNA_3851: 12219 - HMMPfam-Major Facilitator Superfamily-PF07690,ProSiteProfiles-Major facilitator superfamily (MFS) profile.-PS50850,SUPERFAMILY--SSF103473, at 742055 to 744016 12219 mRNA_3852: 12220 - HMMPfam-Glutathione S-transferase, C-terminal domain-PF00043,HMMPfam-Glutathione S-transferase, N-terminal domain-PF13417,ProSiteProfiles-Soluble glutathione S-transferase N-terminal domain profile.-PS50404,ProSiteProfiles-Soluble glutathione S-transferase C-terminal domain profile.-PS50405,SUPERFAMILY--SSF47616,SUPERFAMILY--SSF52833, at 744290 to 745525 12220

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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741,318 - -1.0
741,471 - 0.8
741,492 + 2.0
741,615 - -1.6
741,739 + 1.6
741,748 - 0.5
741,761 - 2.8
741,766 - -1.4
741,788 + -2.5
741,918 + 0.2
742,058 - -0.9
742,143 - -0.8
742,226 - 0.4
742,327 + 12219 mRNA_3851 0.14 -1.1
742,641 + 12219 mRNA_3851 0.30 -1.3
742,801 + 12219 mRNA_3851 0.38 0.1
743,226 - 12219 mRNA_3851 0.60 -0.3
743,389 + 12219 mRNA_3851 0.68 -1.1
743,792 - 12219 mRNA_3851 0.89 0.9
743,871 + -1.0
743,927 - 0.0
743,928 + -0.1
743,940 - 0.0
743,956 - 0.6
743,961 + -2.7
744,053 + -0.4
744,075 - 0.0
744,086 + 0.4
744,101 - -0.1
744,116 - 0.2
744,119 + 1.3
744,126 + 0.0
744,127 - -0.5
744,127 + -1.3
744,151 - 0.1
744,254 - -1.5
744,269 + -1.0
744,396 + -1.8
744,661 + 12220 mRNA_3852 0.30 0.8
744,967 - 12220 mRNA_3852 0.55 0.8
744,977 - 12220 mRNA_3852 0.56 0.3
744,978 - 12220 mRNA_3852 0.56 -0.6