Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3850

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3850: 12218 - BLAST Protein kinase-like domain protein [Cordyceps confrag..., at 738675 to 741507 12218 mRNA_3851: 12219 - HMMPfam-Major Facilitator Superfamily-PF07690,ProSiteProfiles-Major facilitator superfamily (MFS) profile.-PS50850,SUPERFAMILY--SSF103473, at 742055 to 744016 12219

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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737,979 + 0.0
737,987 - 1.3
738,282 - 0.4
738,297 + -0.9
738,560 - -0.8
738,588 - -0.9
738,892 - 0.9
738,939 + -0.4
739,025 + 12218 mRNA_3850 0.12 -1.7
739,032 + 12218 mRNA_3850 0.13 -0.5
739,150 - 12218 mRNA_3850 0.17 0.9
739,262 - 12218 mRNA_3850 0.21 0.3
739,744 - 12218 mRNA_3850 0.38 0.8
740,040 + 12218 mRNA_3850 0.48 2.3
740,040 - 12218 mRNA_3850 0.48 1.2
740,182 + 12218 mRNA_3850 0.53 -0.8
740,216 + 12218 mRNA_3850 0.54 0.3
741,318 - -1.0
741,471 - 0.8
741,492 + 2.0
741,615 - -1.6
741,739 + 1.6
741,748 - 0.5
741,761 - 2.8
741,766 - -1.4
741,788 + -2.5
741,918 + 0.2
742,058 - -0.9
742,143 - -0.8
742,226 - 0.4
742,327 + 12219 mRNA_3851 0.14 -1.1