Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3811

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3810: 12178 - K12869 CRN, CRNKL1, CLF1, SYF3 crooked neck, at 632455 to 635215 12178 mRNA_3811: 12179 - Hypothetical Protein, at 635575 to 638591 12179 mRNA_3812: 12180 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 638841 to 639831 12180

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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635,265 + 1.3
635,521 + 0.6
635,530 - 0.3
635,534 - -2.2
635,557 - -2.2
635,604 - -0.9
635,613 + -0.9
635,634 + -0.9
635,638 + -0.4
635,644 + -1.2
635,757 - -1.6
635,761 - 1.0
635,761 + -0.3
635,765 - -0.0
635,776 + -1.6
635,779 + 0.5
635,918 - 12179 mRNA_3811 0.11 -2.4
635,927 - 12179 mRNA_3811 0.12 0.1
635,927 + 12179 mRNA_3811 0.12 -0.5
636,092 - 12179 mRNA_3811 0.17 -0.8
636,092 - 12179 mRNA_3811 0.17 -0.9
636,095 + 12179 mRNA_3811 0.17 -1.1
636,095 + 12179 mRNA_3811 0.17 -0.1
636,231 - 12179 mRNA_3811 0.22 -0.4
636,550 + 12179 mRNA_3811 0.32 -1.6
636,714 + 12179 mRNA_3811 0.38 -0.7
636,807 - 12179 mRNA_3811 0.41 -0.6
637,165 + 12179 mRNA_3811 0.53 -1.4
637,192 + 12179 mRNA_3811 0.54 0.4
637,377 + 12179 mRNA_3811 0.60 -1.3
637,461 + 12179 mRNA_3811 0.63 -2.8
637,585 - 12179 mRNA_3811 0.67 -1.1
637,776 - 12179 mRNA_3811 0.73 -1.4
638,387 - -0.4
638,548 + -0.5
638,683 - -2.5
638,708 - -1.0
638,723 - 0.4
638,732 + 0.2
638,752 + -0.2
638,810 - 0.0
639,118 + 12180 mRNA_3812 0.28 0.4
639,312 - 12180 mRNA_3812 0.48 0.7
639,452 + 12180 mRNA_3812 0.62 -0.4
639,578 + 12180 mRNA_3812 0.74 -0.5