Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3793

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3792: 12160 - K12811 DDX46, PRP5 ATP-dependent RNA helicase DDX46/PRP5, at 590008 to 594469 12160 mRNA_3793: 12161 - K15528 FAAH fatty acid amide hydrolase, at 594813 to 596952 12161 mRNA_3794: 12162 - KOG4618 Uncharacterized conserved protein, at 597131 to 597697 12162 mRNA_3795: 12163 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 597927 to 600358 12163

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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593,957 - 12160 mRNA_3792 0.89 0.4
594,532 + -0.4
594,552 - 2.1
594,555 - -3.2
594,564 - 0.8
594,565 - -2.1
594,568 + 0.1
594,568 + 0.8
594,704 - -0.7
594,721 + -1.6
594,722 + -1.9
594,722 + 1.4
594,723 - -0.1
594,723 - 1.5
594,728 + 1.0
594,731 - -0.2
594,731 + 1.7
594,733 - 0.8
594,734 + -1.4
594,741 + -1.2
594,744 + 2.6
594,887 - -0.3
594,900 - -1.1
594,904 + 1.2
595,044 - 12161 mRNA_3793 0.11 1.6
595,520 + 12161 mRNA_3793 0.33 -0.3
595,654 - 12161 mRNA_3793 0.39 0.5
595,932 + 12161 mRNA_3793 0.52 0.7
596,346 - 12161 mRNA_3793 0.72 -0.5
596,488 - 12161 mRNA_3793 0.78 0.3
596,506 + 12161 mRNA_3793 0.79 0.0
596,714 + 12161 mRNA_3793 0.89 0.1
596,767 + 0.2
596,908 - -1.2
596,924 + -1.3
597,206 - 12162 mRNA_3794 0.13 -0.5
597,617 - 12162 mRNA_3794 0.86 0.1
597,767 - -0.5
597,776 - -0.3
597,782 - -1.1
597,792 - -1.3
597,792 - 0.1
597,798 - 1.4