Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3778

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3777: 12145 - K20346 TMED4_9_11 p24 family protein alpha, at 557180 to 558034 12145 mRNA_3778: 12146 - HMMPfam-Endonuclease V-PF04493, at 558485 to 559797 12146 mRNA_3779: 12147 - HMMPfam-Spc19-PF08287, at 560572 to 561347 12147

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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557,564 + 12145 mRNA_3777 0.45 0.2
557,597 + 12145 mRNA_3777 0.49 -0.2
558,032 - 0.8
558,305 + -0.4
558,306 - -0.9
558,335 + -2.2
558,442 - 0.3
558,459 + -0.4
558,607 - -1.5
558,917 + 12146 mRNA_3778 0.33 1.3
559,061 - 12146 mRNA_3778 0.44 0.2
559,121 - 12146 mRNA_3778 0.48 -0.3
559,355 - 12146 mRNA_3778 0.66 -0.1
559,667 + -1.8
559,785 + 1.1
559,788 - -2.2
559,788 - -0.8
559,798 + -0.4
559,811 - -0.2
559,824 + -1.5
560,038 - -0.9
560,064 + 0.4
560,074 + 1.2
560,361 + -0.7
560,380 - 0.1
560,386 + -1.7
560,388 + 1.7
560,394 - 0.3
560,399 - -0.6
560,540 - -1.8