Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3744

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3744: 12112 - KOG0955 PHD finger protein BR140/LIN-49, at 479560 to 485967 12112 mRNA_3745: 12113 - BLAST protein of unknown function [Taphrina deformans PYCC ..., at 486209 to 486880 12113

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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478,589 + -0.6
478,592 + -0.7
478,594 - -0.8
478,603 + -2.3
478,606 - -2.1
478,645 - -0.1
478,764 - -1.9
478,764 + 0.7
478,772 + -0.9
478,772 + -0.6
478,785 - 0.9
478,882 - -0.6
478,899 - -0.5
478,899 - -2.2
478,899 - -0.1
478,899 - -1.3
478,904 + 0.2
478,908 + 1.1
478,908 + 1.6
478,935 + 0.5
478,943 + 0.2
479,380 + 0.5
479,504 + -0.3
479,511 + -0.0
479,521 + 1.9
479,532 - 0.7
479,680 - 0.2
479,708 + -0.7
479,821 + 0.3
479,835 - 1.7
479,977 + 0.8
479,997 + -0.6
480,102 + 0.3
480,143 - -0.6
480,565 - 12112 mRNA_3744 0.16 0.5
480,716 - 12112 mRNA_3744 0.18 1.1
480,998 - 12112 mRNA_3744 0.22 0.1
481,288 + 12112 mRNA_3744 0.27 -0.7
481,304 - 12112 mRNA_3744 0.27 0.1
481,307 + 12112 mRNA_3744 0.27 0.6
481,403 - 12112 mRNA_3744 0.29 0.5
481,720 - 12112 mRNA_3744 0.34 -0.5
481,861 - 12112 mRNA_3744 0.36 0.4
482,159 - 12112 mRNA_3744 0.41 0.9
482,457 - 12112 mRNA_3744 0.45 -0.7
482,457 + 12112 mRNA_3744 0.45 3.5
482,618 - 12112 mRNA_3744 0.48 0.7
482,730 + 12112 mRNA_3744 0.49 0.4
482,771 - 12112 mRNA_3744 0.50 0.2
482,777 + 12112 mRNA_3744 0.50 -0.2
482,791 - 12112 mRNA_3744 0.50 1.1
482,913 - 12112 mRNA_3744 0.52 0.1
482,933 + 12112 mRNA_3744 0.53 1.1
483,048 - 12112 mRNA_3744 0.54 0.7
483,062 - 12112 mRNA_3744 0.55 1.6
483,063 + 12112 mRNA_3744 0.55 0.4
483,068 - 12112 mRNA_3744 0.55 1.1
483,108 + 12112 mRNA_3744 0.55 -0.1
483,796 + 12112 mRNA_3744 0.66 0.6
483,798 - 12112 mRNA_3744 0.66 -1.7
483,840 + 12112 mRNA_3744 0.67 -0.8
483,961 - 12112 mRNA_3744 0.69 0.5
483,981 - 12112 mRNA_3744 0.69 -0.5
484,243 - 12112 mRNA_3744 0.73 1.0
484,273 - 12112 mRNA_3744 0.74 0.7
484,379 - 12112 mRNA_3744 0.75 0.9
484,413 - 12112 mRNA_3744 0.76 0.2
484,428 - 12112 mRNA_3744 0.76 1.5
484,431 - 12112 mRNA_3744 0.76 0.6
484,432 - 12112 mRNA_3744 0.76 1.8
484,432 - 12112 mRNA_3744 0.76 -0.9
484,433 - 12112 mRNA_3744 0.76 0.8
484,434 - 12112 mRNA_3744 0.76 -1.7
484,438 - 12112 mRNA_3744 0.76 -0.1
484,441 - 12112 mRNA_3744 0.76 -0.2
484,444 - 12112 mRNA_3744 0.76 2.0
484,444 - 12112 mRNA_3744 0.76 -0.2
484,444 - 12112 mRNA_3744 0.76 1.6
484,445 + 12112 mRNA_3744 0.76 -2.4
484,445 + 12112 mRNA_3744 0.76 1.4
484,446 + 12112 mRNA_3744 0.76 -0.1
484,448 + 12112 mRNA_3744 0.76 -0.1
484,451 + 12112 mRNA_3744 0.76 -1.0
484,453 + 12112 mRNA_3744 0.76 1.1
484,457 + 12112 mRNA_3744 0.76 0.1
484,457 + 12112 mRNA_3744 0.76 1.0
484,458 + 12112 mRNA_3744 0.76 0.9
484,459 + 12112 mRNA_3744 0.76 1.0
484,461 + 12112 mRNA_3744 0.76 0.9
484,463 + 12112 mRNA_3744 0.77 0.2
484,468 + 12112 mRNA_3744 0.77 1.8
484,468 + 12112 mRNA_3744 0.77 1.1
484,473 + 12112 mRNA_3744 0.77 -0.6
484,477 + 12112 mRNA_3744 0.77 1.5
484,591 + 12112 mRNA_3744 0.79 0.5
484,595 + 12112 mRNA_3744 0.79 1.7
484,608 + 12112 mRNA_3744 0.79 1.5
484,688 + 12112 mRNA_3744 0.80 0.5
484,774 + 12112 mRNA_3744 0.81 1.0
484,811 + 12112 mRNA_3744 0.82 0.2
484,988 + 12112 mRNA_3744 0.85 -0.9
485,139 + 12112 mRNA_3744 0.87 -0.1
485,154 - 12112 mRNA_3744 0.87 -1.3
485,451 + 0.3
485,460 + -0.0
485,872 - -0.8
485,895 + 0.0
485,901 + -0.4
486,072 - -0.9
486,346 - 12113 mRNA_3745 0.20 -0.4
486,937 - 0.4
486,965 + -0.9